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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5eefA_

Fold library idPDB HeaderMoleculeTitle
c5eefA_2.15PDB header: hydrolase/hydrolase inhibitorChain: A: PDB Molecule: hdac6;


Added to library: Sat Jul 30 14:21:13 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SATGTGLVYVDAFTRFHSHPECPARVSTVMEMLETEGLLGRCVQVEARAVTEDELLLVHTKEYVELMKST
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Known secondary structure (DSSP)





GGGGS



SS
TTT
GGGS






TTTS
GG
 .........80.........90.........100.........110.........120.........130.........140
Sequence QNMTEEELKTLAEKYDSVYLHPGFFSSACLSVGSVLQLVDKVMTSQLRNGFSINRPPGHHAQADKMNGFC
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Known secondary structure (DSSP) GS

TTTTSBS



TTTTS
S

SS

TT
BTTB
BTTB
 .........150.........160.........170.........180.........190.........200.........210
Sequence MFNNLAIAARYAQKRHRVQRVLIVDWDVHHGQGIQYIFEEDPSVLYFSVHRYEDGSFWPHLKESDSSSVG
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Known secondary structure (DSSP) SS
S

S

SSS

TTT
TT
GGGTSTT

GGGSTT


 .........220.........230.........240.........250.........260.........270.........280
Sequence SGAGQGYNINLPWNKVGMESGDYITAFQQLLLPVAYEFQPQLVLVAAGFDAVIGDPKGGMQVSPECFSIL
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Known secondary structure (DSSP) SGGGTTS
SS


T

S

TTBTT
TTT


B
TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence THMLKGVAQGRLVLALEGGYNLQSTAEGVCASMRSLLGDPCPHLPSSGAPCESALKSISKTISDLYPFWK
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Known secondary structure (DSSP) TTSGGG




STT





SS
SS

GGG
G
 ....
Sequence SLQT
Predicted secondary structure

SS confidence



Known secondary structure (DSSP) GG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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