PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5e8kA_

Fold library id	PDB Header	Molecule	Title
c5e8kA_	PDB header: transferase	Chain: A: PDB Molecule: geranylgeranyl pyrophosphate synthase 10, mitochondrial;	PDBTitle: crystal structure of polyprenyl pyrophosphate synthase 2 from2 arabidopsis thaliana

Links to external resources
Added to library: Sat Nov 14 08:23:51 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y D F K F M S Y M V N K A K S V N K A L E E A V P L R E P E L K I R E A M R Y T L L S D G K R V R P M L C L A A C E L V G G Q E S T A M S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S S S
T T
G G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A C A I E M L H A S S L I L D D L P C M D N D S L R R G K P T N H I V F G E S I A I L A S Q A L I A L A V Q K T T S S T F A D V P P E R I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T T T
S T T
G G G T S S
S
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K T V Q E M V K A V E G L V A G Q Q A D L A G T G L E H L E F I H I H K T A A L L E A A A V M G A I M G G G S D E E I E R L R S Y A R C I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence L M F Q V V D D V L D K L T Y P R L M G V E K S K E Y A E R L N I E A R E H L L G F D I D K V A P L V S L A D Y I V N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T S
T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	D	F	K	F	M	S	Y	M	V	N	K	A	K	S	V	N	K	A	L	E	E	A	V	P	L	R	E	P	E	L	K	I	R	E	A	M	R	Y	T	L	L	S	D	G	K	R	V	R	P	M	L	C	L	A	A	C	E	L	V	G	G	Q	E	S	T	A	M	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T																				S				S	S	S												S	S																	T	T			G	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	C	A	I	E	M	L	H	A	S	S	L	I	L	D	D	L	P	C	M	D	N	D	S	L	R	R	G	K	P	T	N	H	I	V	F	G	E	S	I	A	I	L	A	S	Q	A	L	I	A	L	A	V	Q	K	T	T	S	S	T	F	A	D	V	P	P	E	R	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																	S	T	T	T	T			S			T	T				G	G	G	T	S																						S		S				S		T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	T	V	Q	E	M	V	K	A	V	E	G	L	V	A	G	Q	Q	A	D	L	A	G	T	G	L	E	H	L	E	F	I	H	I	H	K	T	A	A	L	L	E	A	A	A	V	M	G	A	I	M	G	G	G	S	D	E	E	I	E	R	L	R	S	Y	A	R	C	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T								T																									T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	L	M	F	Q	V	V	D	D	V	L	D	K	L	T	Y	P	R	L	M	G	V	E	K	S	K	E	Y	A	E	R	L	N	I	E	A	R	E	H	L	L	G	F	D	I	D	K	V	A	P	L	V	S	L	A	D	Y	I	V	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																						T	T	T	T	S		T	T	T	T