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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5e6tA_

Fold library idPDB HeaderMoleculeTitle
c5e6tA_PDB header: viral proteinChain: A: PDB Molecule: capsid;PDBTitle: crystal structure of bovine norovirus p domain


Added to library: Sat Dec 12 08:13:48 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GSPPFTLPNLPVNNLSHSRVMEPIAQMMSSRNFPASVQFQNGRCTLSGDLLGTTPSSPSDLGAFVGLIAE
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GGGSB
SSSSSB

TTS
S

SSS
B
TTS
B
TT

SSGGGTTSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PGSRVVELSQPNQEDFHAGSAPAPFGFPDFSDCSLTFVVASATTVGERTVNARSPQNFTPALGHITFDEE
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Known secondary structure (DSSP) TT
S
TTS



TTSSSSSTT




SSSS
TT
TTT

GGGTBSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence APADLFRAHLRNLWDPTEHSFWRIPDYRADVLGSEFAPSVSAPGVGETLLFFMCNVPRLNGANPNPCPCL
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Known secondary structure (DSSP)

SS
S

TTTTTS



SS
TTSTTS




STT



SSS


SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LPQEWITHFVSERAALQSDVALLNYVNPNTGRVLFEAKLYANGFLTVNLGASDQATLPVDGIFKFVSWVS
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Known secondary structure (DSSP) S




SSS
TTT

TTT
TT
S
SSS
 ........
Sequence FYYQLRPV
Predicted secondary structure


SS confidence







Known secondary structure (DSSP) TT






Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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