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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5e6rA_

Fold library idPDB HeaderMoleculeTitle
c5e6rA_2.90PDB header: cell adhesionChain: A: PDB Molecule: integrin alpha-l;


Added to library: Sat Mar 5 08:46:43 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence YNLDVRGARSFSPPRAGRHFGYRVLQVGNGVIVGAPGEGNSTGSLYQCQSGTGHCLPVTLRGSNYTSKYL
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Known secondary structure (DSSP)

B
GGG


TT

TTTTSTT


TT


TTT




TT




TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GMTLATDPTDGSILACDPGLSRTCDQNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSM
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Known secondary structure (DSSP) TS
TTT

TTSS
TTS

TT





SS
BT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKWKDPDALLKHVKHMLLLTNTFG
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Known secondary structure (DSSP) TS
TTSSSSS
TT

STT




B


 .........220.........230.........240.........250.........260.........270.........280
Sequence AINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASK
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Known secondary structure (DSSP) TS
GGGT

TTSSS

SS



GGGTTSSGGG
SGGGGGGS
S
 .........290.........300.........310.........320.........330.........340.........350
Sequence PASEFVKILDTFEKLKDLFTELQKKIDLTSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADL
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Known secondary structure (DSSP)
SSTTT



SS
SSTT

TTTTTB

TTS
 .........360.........370.........380.........390.........400.........410.........420
Sequence QDDTFIGNEPLTPEVRAGYLGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGT
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Known secondary structure (DSSP) S


SS

GGGTT

BTS
BSSS

TTGGGT



TT




 .........430.........440.........450.........460.........470.........480.........490
Sequence QIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFIYQRRQLGFEEVSELQGDPGYPLGRFGEA
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Known secondary structure (DSSP) STTS
TTS
SS
SSB


TT


TTB



SSS


SSBTTS
TTS
 .........500.........510.........520.........530.........540.........550.........560
Sequence ITALTDINGDGLVDVAVGAPLEEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGD
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Known secondary structure (DSSP)


SSSSSS

TTSTTB
B
SSSB
SS
S
TT

SBTSS

SSSS
 .........570.........580.
Sequence GLADVAVGAESQMIVLSSRPV
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Known secondary structure (DSSP) SS
TTB



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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