PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5e44A_

Fold library id	PDB Header	Molecule	Title
c5e44A_	PDB header: transcription	Chain: A: PDB Molecule: fnr regulator;	PDBTitle: crystal structure of holo-fnr of a. fischeri

Links to external resources
Added to library: Sat Dec 19 09:35:25 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence H C Q D C S I S Q L C I P F T L N D S E L D Q L D E I I E R K K P I Q K G Q E L F K A G D E L K C L Y A I R S G T I K S Y T I T E Q G D E Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T S T T T T
G G G S
B
T T
T T
B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I T A F H L A G D L V G F D A I T E A Q H P S F A Q A L E T S M V C E I P Y E I L D D L S G K M P K L R Q Q I M R L M S N E I K G D Q E M I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
G G G T T T T B
S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L L L S K K N A E E R L A A F L Y N L S T R F H Q R G F S P R E F R L T M T R G D I G N Y L G L T V E T I S R L L G R F Q K T E M L T V K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
S
T
T T S T

. . . . . . . . . 220 . . . . . . . . . 230

Sequence K Y I T I N D H D A L A E L A G S A K E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	H	C	Q	D	C	S	I	S	Q	L	C	I	P	F	T	L	N	D	S	E	L	D	Q	L	D	E	I	I	E	R	K	K	P	I	Q	K	G	Q	E	L	F	K	A	G	D	E	L	K	C	L	Y	A	I	R	S	G	T	I	K	S	Y	T	I	T	E	Q	G	D	E	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S			T	T	T	T	T	S	T	T	T	T										G	G	G	S						B		T	T						T	T		B																			T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	T	A	F	H	L	A	G	D	L	V	G	F	D	A	I	T	E	A	Q	H	P	S	F	A	Q	A	L	E	T	S	M	V	C	E	I	P	Y	E	I	L	D	D	L	S	G	K	M	P	K	L	R	Q	Q	I	M	R	L	M	S	N	E	I	K	G	D	Q	E	M	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T					G	G	G	T	T	T	T	B			S																								T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	L	L	S	K	K	N	A	E	E	R	L	A	A	F	L	Y	N	L	S	T	R	F	H	Q	R	G	F	S	P	R	E	F	R	L	T	M	T	R	G	D	I	G	N	Y	L	G	L	T	V	E	T	I	S	R	L	L	G	R	F	Q	K	T	E	M	L	T	V	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										T	T	S		S	S						S										T																T	T	S					T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	K	Y	I	T	I	N	D	H	D	A	L	A	E	L	A	G	S	A	K	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T					S										T