PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5e06A_

Fold library id	PDB Header	Molecule	Title
c5e06A_	PDB header: nuclear protein	Chain: A: PDB Molecule: nucleocapsid protein;	PDBTitle: structure of sin nombre virus nucleoprotein in long-axis crystal form

Links to external resources
Added to library: Sat Dec 5 08:12:24 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G Q T A D W K S I G L Y I L S F A L P I I L K A L Y M L S T R G R Q T I K E N K G T R I R F K D D S S Y E E V N G I R K P R H L Y V S M P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
S T
S S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A Q S T M K A D E I T P G R F R T I A C G L F P A Q V K A R N I I S P V M G V I G F S F F V K D W M E R I D D F L A A R C P F L P E Q K D P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T T
T T T T T S B
T T S
S S G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R D A A L A T N R A Y F I T R Q L Q V D E S K V S D I E D L I A D A R A E S A T I F A D I A T P H S V W V F A C A P D R C P P T A L Y V A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G G G B G G G
T T
S
S S S S S G G G G G T T
S S
G G G T T S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence M P E L G A F F A I L Q D M R N T I M K S A F Y Q S Y L R R T Q S M G I Q L D Q K I I I L Y M S H W G R E A V N H F H L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	Q	T	A	D	W	K	S	I	G	L	Y	I	L	S	F	A	L	P	I	I	L	K	A	L	Y	M	L	S	T	R	G	R	Q	T	I	K	E	N	K	G	T	R	I	R	F	K	D	D	S	S	Y	E	E	V	N	G	I	R	K	P	R	H	L	Y	V	S	M	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	S															S							T			S	S							T	T						T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	Q	S	T	M	K	A	D	E	I	T	P	G	R	F	R	T	I	A	C	G	L	F	P	A	Q	V	K	A	R	N	I	I	S	P	V	M	G	V	I	G	F	S	F	F	V	K	D	W	M	E	R	I	D	D	F	L	A	A	R	C	P	F	L	P	E	Q	K	D	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S			S	S																						T	T								T	T	T						T	T											S	B		T	T	S				S	S	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	D	A	A	L	A	T	N	R	A	Y	F	I	T	R	Q	L	Q	V	D	E	S	K	V	S	D	I	E	D	L	I	A	D	A	R	A	E	S	A	T	I	F	A	D	I	A	T	P	H	S	V	W	V	F	A	C	A	P	D	R	C	P	P	T	A	L	Y	V	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	G	G	G	G	B													G	G	G															T	T					S		S	S	S	S	S	G	G	G	G	G	T	T			S	S			G	G	G	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	M	P	E	L	G	A	F	F	A	I	L	Q	D	M	R	N	T	I	M	K	S	A	F	Y	Q	S	Y	L	R	R	T	Q	S	M	G	I	Q	L	D	Q	K	I	I	I	L	Y	M	S	H	W	G	R	E	A	V	N	H	F	H	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	T	T	S																						T