PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5dteD_

Fold library id	PDB Header	Molecule	Title
c5dteD_	PDB header: transport protein	Chain: D: PDB Molecule: monosaccharide-transporting atpase;	PDBTitle: crystal structure of an abc transporter periplasmic solute binding2 protein (ipr025997) from actinobacillus succinogenes 130z(asuc_0081,3 target efi-511065) with bound d-allose

Links to external resources
Added to library: Sat Oct 10 09:06:43 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K P Q I A L L M K T L S N E Y F I S M R Q G A E E T A K Q K D I D L I V Q V A T E Q L V G L V E N M I A K K V D A I I V T P N D S I A F I P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S T
T T
S
S
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A F Q K A E K A G I P I I D L D V R L D A K A A E A A G L K F N Y V G V D N F N G G Y L E A K N L A E A I G K K G N V A I L E G I P G V D N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
T
T T S
S S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G E Q R K G G A L K A F A E Y P D I K I V A S Q S A N W E T E Q A L N V T T N I L T A N P N I N G I F A A N D N M A I G A V T A V E N A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T T
T T
S S T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A G K V L V S G Y D G I P L A I E Y V K Q G K M Q N T I D Q L P K K Q V A I A I E H A L K Q I N K Q E I P S V Y Y V D P V V V D K E Q S K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T S
S B
T S S S
T T
S
T

.

Sequence Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	P	Q	I	A	L	L	M	K	T	L	S	N	E	Y	F	I	S	M	R	Q	G	A	E	E	T	A	K	Q	K	D	I	D	L	I	V	Q	V	A	T	E	Q	L	V	G	L	V	E	N	M	I	A	K	K	V	D	A	I	I	V	T	P	N	D	S	I	A	F	I	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S		S	S	S																		T																						T	T		S							S		T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	F	Q	K	A	E	K	A	G	I	P	I	I	D	L	D	V	R	L	D	A	K	A	A	E	A	A	G	L	K	F	N	Y	V	G	V	D	N	F	N	G	G	Y	L	E	A	K	N	L	A	E	A	I	G	K	K	G	N	V	A	I	L	E	G	I	P	G	V	D	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T							S	S											T																									T	T	S									S	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	E	Q	R	K	G	G	A	L	K	A	F	A	E	Y	P	D	I	K	I	V	A	S	Q	S	A	N	W	E	T	E	Q	A	L	N	V	T	T	N	I	L	T	A	N	P	N	I	N	G	I	F	A	A	N	D	N	M	A	I	G	A	V	T	A	V	E	N	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T		T	T										T	T																	T	T							S	S													T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	G	K	V	L	V	S	G	Y	D	G	I	P	L	A	I	E	Y	V	K	Q	G	K	M	Q	N	T	I	D	Q	L	P	K	K	Q	V	A	I	A	I	E	H	A	L	K	Q	I	N	K	Q	E	I	P	S	V	Y	Y	V	D	P	V	V	V	D	K	E	Q	S	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	T	S					S	B												T	S	S	S																							T	T					S																T
	.
Sequence	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)