Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5dn6A_

Fold library idPDB HeaderMoleculeTitle
c5dn6A_PDB header: hydrolaseChain: A: PDB Molecule: atp synthase subunit alpha;PDBTitle: atp synthase from paracoccus denitrificans


Added to library: Sat Oct 31 08:31:21 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GIQAAEISAILKDQIKNFGQDAEVAEVGQVLSVGDGIARVYGLDKVQAGEMVEFPGGIRGMVLNLETDNV
Predicted secondary structure




























SS confidence





































































Known secondary structure (DSSP)


SS



TT


TTTTT
TT

TT

TTS
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence GVVIFGDDRDIKEGDTVKRTGAIVEVPAGKELLGRVVDALGNPIDGKGPLNASERRIADVKAPGIMPRKS
Predicted secondary structure
















































SS confidence





































































Known secondary structure (DSSP) S
GGG

TT


SGGGTT
TTS
B
SSS




SSS




STTB

 .........150.........160.........170.........180.........190.........200.........210
Sequence VHEPMATGLKSVDAMIPVGRGQRELIIGDRQTGKTAIALDTILNQANYNGMKTLHCIYVAVGQKRSTVAQ
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP)

SB


S
S

BTT
B
GGG
TTT


S

S

 .........220.........230.........240.........250.........260.........270.........280
Sequence LVKKLEETGAMAYTTVVAATASDPAPMQYLAPYSATAMGEYFRDNGMDALIIYDDLSKQAVAYRQMSLLL
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TT
GGG
TTS
TT
T
 .........290.........300.........310.........320.........330.........340.........350
Sequence RRPPGREAYPGDVFYLHSRLLERSAKLNEANGAGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETE
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) T

B
GGG
BTTT
B
TTTT


STT
TTSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence LFFQGIRPAVNTGLSVSRVGSAAQTKAMKSVAGPVKLELAQYREMAAFAQFGSDLDAATQKLLNRGARLT
Predicted secondary structure



















SS confidence





































































Known secondary structure (DSSP) T
SS
B
TTT
SSGGGGS
TTTTT

SS

 .........430.........440.........450.........460.........470.........480.........490
Sequence ELMKQPQYSPLTNAEIVIVIYAGTKGYLDGIPVRDVTKWEHGLLQYLRNQKADLLEDMTKNDRKVAGELE
Predicted secondary structure














SS confidence





































































Known secondary structure (DSSP) TT


TT



TTTTTTS
GGG





 .........500.....
Sequence DAIKAALDGYAKTYA
Predicted secondary structure

SS confidence














Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D