PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5dmnA_

Fold library id	PDB Header	Molecule	Title
c5dmnA_	PDB header: transferase	Chain: A: PDB Molecule: homocysteine s-methyltransferase;	PDBTitle: crystal structure of the homocysteine methyltransferase mmum from2 escherichia coli, apo form

Links to external resources
Added to library: Sat Nov 28 08:22:13 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N P L R A L L D K Q D I L L L D G A M A T E L E A R G C N S A K V L V E N P E L I R E V H L D Y Y R A G A Q C A I T A S Y A A R G L D E A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
S
B
S T T
T T
T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S K A L I G K S V E L A R K A R E A Y L A E N P Q A G T L L V A G S V G P Y G Y H C S V E A F Q A F H R P R V E A L L D A G A D L L A C E T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L P N F S E I E A L A E L L T A Y P R A R A W F S F T L R D S E H L S D G T P L R D V V A L L A G Y P Q V V A L G I N C I A L E N T T A A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T
B S S S S B B T T S
B T T
T T S
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . .

Sequence Q H L H G L T V L P L V V Y P N S G Q L A D Y L P Q W Q A A G A R L I G G C C R T T P A D I A A L K A R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S T T
T T
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	P	L	R	A	L	L	D	K	Q	D	I	L	L	L	D	G	A	M	A	T	E	L	E	A	R	G	C	N	S	A	K	V	L	V	E	N	P	E	L	I	R	E	V	H	L	D	Y	Y	R	A	G	A	Q	C	A	I	T	A	S	Y	A	A	R	G	L	D	E	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T					T	T		S				B				S							T	T				T	T																				T		S										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	K	A	L	I	G	K	S	V	E	L	A	R	K	A	R	E	A	Y	L	A	E	N	P	Q	A	G	T	L	L	V	A	G	S	V	G	P	Y	G	Y	H	C	S	V	E	A	F	Q	A	F	H	R	P	R	V	E	A	L	L	D	A	G	A	D	L	L	A	C	E	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								G	G	G																																				T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	P	N	F	S	E	I	E	A	L	A	E	L	L	T	A	Y	P	R	A	R	A	W	F	S	F	T	L	R	D	S	E	H	L	S	D	G	T	P	L	R	D	V	V	A	L	L	A	G	Y	P	Q	V	V	A	L	G	I	N	C	I	A	L	E	N	T	T	A	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S	T	T									B	S	S	S	S	B	B	T	T	S		B									T	T		T	T								S			G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Sequence	Q	H	L	H	G	L	T	V	L	P	L	V	V	Y	P	N	S	G	Q	L	A	D	Y	L	P	Q	W	Q	A	A	G	A	R	L	I	G	G	C	C	R	T	T	P	A	D	I	A	A	L	K	A	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T			S												T	T	S							T	T								T	T												T