PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5dm3A_

Fold library id	PDB Header	Molecule	Title
c5dm3A_	PDB header: ligase	Chain: A: PDB Molecule: l-glutamine synthetase;	PDBTitle: crystal structure of glutamine synthetase from chromohalobacter2 salexigens dsm 3043(csal_0679, target efi-550015) with bound adp

Links to external resources
Added to library: Sat Sep 19 08:18:12 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T L A L D D L K T R V E S G E I D T V L V C I V D M Q G R L M G K R L H A R H F V D H G W E E T H C I M K P D L A T L R C V P W L E G T A M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S
T T T T
B
G G G
T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L C D L L H A E V P H A P R A I L K R Q L A R L E A M G L E A I M A T E L E F F L F E K S L D T T K E E H V L R P L R N H L H A A G I P V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T T
S S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence E G T K G E G Q E E L N I R C A K A L D T A D Y H T I A K H A T K E I A W Q Q G R A V T F L S K W H H A H A G S S S H I H Q S L W K Q G L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S
T T S
B T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence A F H D E R D A L G M S A L M K H Y L A G L L K Y A P D Y T Y F L A P Y L N S Y K R F Q P T R T V W S V D N R T A G F R L C A E G T R A V R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B
S S S S S S B
T T T T T
S G G G G G S
S S
S S S T T S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence I E C R I G G S D L N P Y L A M A G Q L A A G I K G I E E C L A L P P P A G L I P Q N L R D A M E A L R G S T M L R E A M G E D V V D H Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B T T S
T T T
B
S S T

. . . . . . . . . 360 . . . . . . . . . 370 . . . .

Sequence R A A E V E L E D F Q R V V S D Y E V A R G F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	L	A	L	D	D	L	K	T	R	V	E	S	G	E	I	D	T	V	L	V	C	I	V	D	M	Q	G	R	L	M	G	K	R	L	H	A	R	H	F	V	D	H	G	W	E	E	T	H	C	I	M	K	P	D	L	A	T	L	R	C	V	P	W	L	E	G	T	A	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S											T	T	S															T	T	T	T		B								G	G	G					T	T	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	C	D	L	L	H	A	E	V	P	H	A	P	R	A	I	L	K	R	Q	L	A	R	L	E	A	M	G	L	E	A	I	M	A	T	E	L	E	F	F	L	F	E	K	S	L	D	T	T	K	E	E	H	V	L	R	P	L	R	N	H	L	H	A	A	G	I	P	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	S														T	T	T															S	S																				T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	E	G	T	K	G	E	G	Q	E	E	L	N	I	R	C	A	K	A	L	D	T	A	D	Y	H	T	I	A	K	H	A	T	K	E	I	A	W	Q	Q	G	R	A	V	T	F	L	S	K	W	H	H	A	H	A	G	S	S	S	H	I	H	Q	S	L	W	K	Q	G	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																							T	T							S		S		T	T	S				B										T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	A	F	H	D	E	R	D	A	L	G	M	S	A	L	M	K	H	Y	L	A	G	L	L	K	Y	A	P	D	Y	T	Y	F	L	A	P	Y	L	N	S	Y	K	R	F	Q	P	T	R	T	V	W	S	V	D	N	R	T	A	G	F	R	L	C	A	E	G	T	R	A	V	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	B		S	S	S	S	S	S	B														T	T	T	T	T							S	G	G	G	G	G	S										S	S		S	S							S	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	I	E	C	R	I	G	G	S	D	L	N	P	Y	L	A	M	A	G	Q	L	A	A	G	I	K	G	I	E	E	C	L	A	L	P	P	P	A	G	L	I	P	Q	N	L	R	D	A	M	E	A	L	R	G	S	T	M	L	R	E	A	M	G	E	D	V	V	D	H	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							B	T	T	S																		T	T	T									B			S	S										T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
Sequence	R	A	A	E	V	E	L	E	D	F	Q	R	V	V	S	D	Y	E	V	A	R	G	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	S										T