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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5dkvD_

Fold library idPDB HeaderMoleculeTitle
c5dkvD_PDB header: sugar binding proteinChain: D: PDB Molecule: abc transporter substrate binding protein (ribose);PDBTitle: crystal structure of an abc transporter solute binding protein from2 agrobacterium vitis(avis_5339, target efi-511225) bound with alpha-d-3 tagatopyranose


Added to library: Sat Oct 3 09:15:15 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KFRIALIPGLTTDAFYITMHKGAEAAAAAIGAQIIFQGAPDFNPVTQVPVLDAVIAKKPDAILIAPTDTT
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Known secondary structure (DSSP)


S
TT
T



SSS
T

S

SSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence QLVQPLKKAADAGIPMITVDTFIGTGDYQTGAGDGDFPLSYIASDNVLGGEIAARSLALAIGDKGKVYVS
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Known secondary structure (DSSP) TTTT

SS
STTS

SSS
STT

SS

TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence NVKPGVSTTDQREQGFKSEMAKHPGITVLETQFNDNDANKAASQLQAVYARNPDLAGVFGANLFSGLGSA
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Known secondary structure (DSSP)

TT
TT
TT



TT

TTSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence NGVQQAGQSGTIKVVAFDAPGSVVDNLKSGLIDFAIAQHPAEIGYYGVISAYAHLTGQSIPTKIGTGFTV
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Known secondary structure (DSSP) TT
TTTSS

TTTS
S

TT



S

 .........290........
Sequence INKSNVTDPAVARFIYAE
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Known secondary structure (DSSP)
TTTTTSTTS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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