PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5dj3B_

Fold library id	PDB Header	Molecule	Title
c5dj3B_	PDB header: transferase	Chain: B: PDB Molecule: plp-dependent l-arginine hydroxylase mppp;	PDBTitle: structure of the plp-dependent l-arginine hydroxylase mppp with d-2 arginine bound

Links to external resources
Added to library: Sat Nov 28 08:51:44 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L N I A D G H A R Q A L S P G Q Q K I V N E L P V L W A E S E Q R P V Q Q I E S E A H Q A Y F T L L G Q H G Y P A E P G R V L S C Y S S S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S
S
T S
T T
T T S
S T T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S M E I L A R S L S A S V D R V A L V H P T F D N I A D L L R G N G L D L V P V E E D A L H G A D L S A E L L S S V G C V F V T T P N N P T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S
T T
S
T T
S S S
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G R V L A E E R L R R L A E Q C A E H G T V L A L D T S F R G F D A A A H Y D H Y A V L Q E A G C R W V V I E D T G K L W P T L D L K A G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T G G G
G G G
S
T
T T T S
S T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L V F S E D I G L P V E K I Y S D I L L G V S P L I L A L I R E F S R D A A D G G L A D L H A F I L H N R S V V R R A L A G V E G V S F P D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
S
T T T T S T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence P E S R S S V E R V A F A G R T G T E V W E E L Q R H H V F A L P C R Q F H W A E P S D G D H M V R I A L S R S T E P L E K S V Q V L R T V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S S S S
T T
B
S G G G
S S
G G G G T T
S S

.

Sequence L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	N	I	A	D	G	H	A	R	Q	A	L	S	P	G	Q	Q	K	I	V	N	E	L	P	V	L	W	A	E	S	E	Q	R	P	V	Q	Q	I	E	S	E	A	H	Q	A	Y	F	T	L	L	G	Q	H	G	Y	P	A	E	P	G	R	V	L	S	C	Y	S	S	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		B			S		S			S												T											S																	T	T		T	T	S			S	T	T	S					S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	M	E	I	L	A	R	S	L	S	A	S	V	D	R	V	A	L	V	H	P	T	F	D	N	I	A	D	L	L	R	G	N	G	L	D	L	V	P	V	E	E	D	A	L	H	G	A	D	L	S	A	E	L	L	S	S	V	G	C	V	F	V	T	T	P	N	N	P	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	T		S							S												T	T														S								T	T		S						S	S		T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	R	V	L	A	E	E	R	L	R	R	L	A	E	Q	C	A	E	H	G	T	V	L	A	L	D	T	S	F	R	G	F	D	A	A	A	H	Y	D	H	Y	A	V	L	Q	E	A	G	C	R	W	V	V	I	E	D	T	G	K	L	W	P	T	L	D	L	K	A	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				T								T	T	G	G	G		G	G	G		S										T										T	T	T	S		S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	V	F	S	E	D	I	G	L	P	V	E	K	I	Y	S	D	I	L	L	G	V	S	P	L	I	L	A	L	I	R	E	F	S	R	D	A	A	D	G	G	L	A	D	L	H	A	F	I	L	H	N	R	S	V	V	R	R	A	L	A	G	V	E	G	V	S	F	P	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T			S											S																			T	T																					T	T	S	T	T				S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	P	E	S	R	S	S	V	E	R	V	A	F	A	G	R	T	G	T	E	V	W	E	E	L	Q	R	H	H	V	F	A	L	P	C	R	Q	F	H	W	A	E	P	S	D	G	D	H	M	V	R	I	A	L	S	R	S	T	E	P	L	E	K	S	V	Q	V	L	R	T	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T			S	S							S	S	S												T	T		B				S	G	G	G		S	S		G	G	G	G	T	T							S	S
	.
Sequence	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)