PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5dedA_

Fold library id	PDB Header	Molecule	Title
c5dedA_	PDB header: transferase	Chain: A: PDB Molecule: gtp pyrophosphokinase yjbm;	PDBTitle: crystal structure of the small alarmone synthethase 1 from bacillus2 subtilis bound to its product pppgpp

Links to external resources
Added to library: Sat Oct 31 08:19:24 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D K Q W E R F L V P Y R Q A V E E L K V K L K G I R T L Y E Y E D D H S P I E F V T G R V K P V A S I L E K A R R K S I P L H E I E T M Q D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T T T
S
T T
G G G G G G
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I A G L R I M C Q F V D D I Q I V K E M L F A R K D F T V V D Q R D Y I A E H K E S G Y R S Y H L V V L Y P L Q T V S G E K H V L V E I Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S
S S S T T T S
T T
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . .

Sequence R T L A M N F W A T I E H S L N Y K Y S G N I P E K V K L R L Q R A S E A A S R L D E E M S E I R G E V Q E A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	K	Q	W	E	R	F	L	V	P	Y	R	Q	A	V	E	E	L	K	V	K	L	K	G	I	R	T	L	Y	E	Y	E	D	D	H	S	P	I	E	F	V	T	G	R	V	K	P	V	A	S	I	L	E	K	A	R	R	K	S	I	P	L	H	E	I	E	T	M	Q	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T	T	T	T	T				S																					T	T			G	G	G	G	G	G		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	A	G	L	R	I	M	C	Q	F	V	D	D	I	Q	I	V	K	E	M	L	F	A	R	K	D	F	T	V	V	D	Q	R	D	Y	I	A	E	H	K	E	S	G	Y	R	S	Y	H	L	V	V	L	Y	P	L	Q	T	V	S	G	E	K	H	V	L	V	E	I	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								S	S															S	S	S								T	T	T	S			T	T																S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence	R	T	L	A	M	N	F	W	A	T	I	E	H	S	L	N	Y	K	Y	S	G	N	I	P	E	K	V	K	L	R	L	Q	R	A	S	E	A	A	S	R	L	D	E	E	M	S	E	I	R	G	E	V	Q	E	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S		S