PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5dbuI_

Fold library id	PDB Header	Molecule	Title
c5dbuI_	2.80	PDB header: lyase	Chain: I: PDB Molecule: deoxyribose-phosphate aldolase;

Links to external resources
Added to library: Sat Apr 16 08:22:43 2016

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M K L N K Y I D H T I L K P E T T Q E Q V E K I L A E A K E Y D F A S V C V N P T W V A L A A E S L K D S D V K V C T V I G F P L G A N T P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G
T T
T T
S
G G G T T S S
S T T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V K A F E T K D A I S N G A D E I D M V I N I G A L K T G N Y D L V L E D I K A V V A A S G D K L V K V I I E A C L L T D D E K V K A C Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
T T T S
T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S Q E A G A D Y V K T S T G F S T G G A T V A D V A L M R K T V G P D M G V K A S G G A R S Y E D A I A F I E A G A S R I G A S S G V A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S S S S
S S S S S
S T T T
S S
T T

.

Sequence M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	K	L	N	K	Y	I	D	H	T	I	L	K	P	E	T	T	Q	E	Q	V	E	K	I	L	A	E	A	K	E	Y	D	F	A	S	V	C	V	N	P	T	W	V	A	L	A	A	E	S	L	K	D	S	D	V	K	V	C	T	V	I	G	F	P	L	G	A	N	T	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	G	G	G								T	T																T	T		S						G	G	G									T	T	S	S								S	T	T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	K	A	F	E	T	K	D	A	I	S	N	G	A	D	E	I	D	M	V	I	N	I	G	A	L	K	T	G	N	Y	D	L	V	L	E	D	I	K	A	V	V	A	A	S	G	D	K	L	V	K	V	I	I	E	A	C	L	L	T	D	D	E	K	V	K	A	C	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T																T																T	T	T	S								T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	Q	E	A	G	A	D	Y	V	K	T	S	T	G	F	S	T	G	G	A	T	V	A	D	V	A	L	M	R	K	T	V	G	P	D	M	G	V	K	A	S	G	G	A	R	S	Y	E	D	A	I	A	F	I	E	A	G	A	S	R	I	G	A	S	S	G	V	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T		S							S	S	S	S																	S	S	S						S	S			S									T	T	T		S					S		T	T
	.
Sequence	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)