Standard Mode | Switch to Expert Mode | Login to view past jobsRetrieve Phyre Job Id
 
Subscribe to Phyre at Google Groups
Email:
Visit Phyre at Google Groups
 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5d9aD_

Fold library idPDB HeaderMoleculeTitle
c5d9aD_PDB header: viral proteinChain: D: PDB Molecule: polymerase acidic protein;PDBTitle: influenza c virus rna-dependent rna polymerase - space group p212121


Added to library: Sat Oct 24 13:59:44 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TFAEIAEAFLEPEAVRIAKEAVEEYGDHERKIIQIGIHFQVCCMFCDEYLSTNGSDRFVLIEGRKRGTAV
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP)
S
T


STTSS
B
SSSSBS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence SLQNELCKSYDLEPLPFLCDIFDREEKQFVEIGITRKADDSYFQSKFGKLGNSCKIFVFSYDGRLDKNCE
Predicted secondary structure
























SS confidence





































































Known secondary structure (DSSP) T




SS

SSSS
SSS
TTTSTTS
SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence GPMEEQKLRIFSFLATAADFLRKENMFNEIFLPDNEETIIEMKKGKTFLELRDESVPLPFQTYEQMKDYC
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)


TT

TTS

TTTTTS

S



TT

SS

S
 .........220.........230.........240.........250.........260.........270.........280
Sequence EKFKGNPRELASKVSQMQSNIKLPIKHYEQNKFRQIRLPKGPMAPYTHKFLMEEAWMFTKISDPERSRAG
Predicted secondary structure



































SS confidence





































































Known secondary structure (DSSP) T



TT





TTTTS




SSB



SSS

TTB



TTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EILIDFFKKGNLSAIRPKDKPLQGKYPIHYKNLWNQIKAAIADRTMVINENDHSEFLGGRASKKIPEISL
Predicted secondary structure































SS confidence





































































Known secondary structure (DSSP) STTTGGG



SS
SS
SS
SB


SS







 .........360.........370.........380.........390.........400.........410.........420
Sequence TQDVITTEGLKQSENKLPEPRSFPRWFNAEWMWAIKDSDLTGWVPMAEYPPADNELEDYAEHLNKTMEGV
Predicted secondary structure


















SS confidence





































































Known secondary structure (DSSP) TT
S











B

SSB
SS
B
S








TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LQGTNCAREMGKCILTVGALMTECRLFPGKIKVVPIYARSKERKSMQEGLPVPSEMDCLFGICVKSKSHD
Predicted secondary structure


























SS confidence





































































Known secondary structure (DSSP) SBSTTS
B


SSS

S
S



 .........500.........510.........520.........530.........540.........550.........560
Sequence GMYTIITFEFSIREPNLEKHQKYTVFEAGHTTVRMKKREVPLYLYCRTTALSKIKNDWLSKARRCFITTM
Predicted secondary structure






















SS confidence





































































Known secondary structure (DSSP)

SS


TTT
SS









T
 .........570.........580.........590.........600.........610.........620.........630
Sequence DTVETICLRESAKAEENLVEKTLNEKQMWIGKKNGELIAQPLREALRVQLVQQFYFCIYNDSQLEGFCNE
Predicted secondary structure

















SS confidence





































































Known secondary structure (DSSP) TS


TTTTTT

 .........640.........650.........660.........670.........680.........690...
Sequence QKKILMALEGDKKNKSSFGFNPEGLLEKIEECLINNPMCLFMAQRLNELVIEASKRGAKFFKT
Predicted secondary structure











SS confidence






























































Known secondary structure (DSSP) TT




S
T
SS
S
SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


Phyre is now FREE for commercial users!

All images and data generated by Phyre2 are free to use in any publication with acknowledgement

Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
© Structural Bioinformatics Group, Imperial College, London
Michael Sternberg 
Disclaimer
Terms and Conditions
Structural Biology Group logo Imperial logo
BBSRC logo
Phyre2 is part of Genome3D