PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5d6sB_

Fold library id	PDB Header	Molecule	Title
c5d6sB_	PDB header: oxidoreductase	Chain: B: PDB Molecule: epoxyqueuosine reductase;	PDBTitle: structure of epoxyqueuosine reductase from streptococcus thermophilus.

Links to external resources
Added to library: Sat Sep 26 08:34:07 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M N I K L E I Q K M A K E I G I S K I G F T T A D D F D Y L E K S L R L G V E E G R T T G F E H K N I E E R I Y P K L S L E S A K T I I S I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
T T T T
S
S
S
G G G T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V A Y P H K L P Q Q P Q K T E F K R G K I T P N S W G L D Y H Y V L Q D K L K R L A K G I E K L T E N F E Y K G M V D T G A L V D T A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S S
B
B
G G G S S S
T T S S S
S S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K R A G I G F I G K N G L V I S K E Y G S Y M Y L G E L I T N L E I E P D Q E V D Y G C G D C R R C L D A C P T S C L I G D G T M N A R R C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T S S B T T T B T
S
S
T T
B
S S S
B
G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L S F Q T Q D K G M M D M E F R K K I K T V I Y G C D I C Q I S C P Y N R G I D N P L D I D P D L A M P E L L P F L E L T N K S F K E T F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T B
S
T
G G G T T
S
B T T
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence M I A G S W R G K N I L Q R N A I I A L A N L H D R N A I V K L M E I I D K N N N P I H T A T A I W A L G E I V K K P D E G M L D Y M R G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S G G G T T
T T
G G G
S S
S S
T

. . . . . . . . . 360 . . . . . . . . . 370

Sequence S P K D E H S Q A E W E L V C A K W Q I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	N	I	K	L	E	I	Q	K	M	A	K	E	I	G	I	S	K	I	G	F	T	T	A	D	D	F	D	Y	L	E	K	S	L	R	L	G	V	E	E	G	R	T	T	G	F	E	H	K	N	I	E	E	R	I	Y	P	K	L	S	L	E	S	A	K	T	I	I	S	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T		S											T	T	T											T				S		S		S								G	G	G	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	A	Y	P	H	K	L	P	Q	Q	P	Q	K	T	E	F	K	R	G	K	I	T	P	N	S	W	G	L	D	Y	H	Y	V	L	Q	D	K	L	K	R	L	A	K	G	I	E	K	L	T	E	N	F	E	Y	K	G	M	V	D	T	G	A	L	V	D	T	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S		S	S						S	S		B		B			G	G	G	S	S	S																			T	T	S	S	S							S	S	S	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	R	A	G	I	G	F	I	G	K	N	G	L	V	I	S	K	E	Y	G	S	Y	M	Y	L	G	E	L	I	T	N	L	E	I	E	P	D	Q	E	V	D	Y	G	C	G	D	C	R	R	C	L	D	A	C	P	T	S	C	L	I	G	D	G	T	M	N	A	R	R	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	S					T	T	S	S			B	T	T	T	B	T																				S					S									T	T			B		S	S	S		B		G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	S	F	Q	T	Q	D	K	G	M	M	D	M	E	F	R	K	K	I	K	T	V	I	Y	G	C	D	I	C	Q	I	S	C	P	Y	N	R	G	I	D	N	P	L	D	I	D	P	D	L	A	M	P	E	L	L	P	F	L	E	L	T	N	K	S	F	K	E	T	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S										T	T	T	B		S								T		G	G	G	T	T													S		B					T	T											T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	M	I	A	G	S	W	R	G	K	N	I	L	Q	R	N	A	I	I	A	L	A	N	L	H	D	R	N	A	I	V	K	L	M	E	I	I	D	K	N	N	N	P	I	H	T	A	T	A	I	W	A	L	G	E	I	V	K	K	P	D	E	G	M	L	D	Y	M	R	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	G	G	G	T	T																T	T		G	G	G												S	S																S	S											T
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
Sequence	S	P	K	D	E	H	S	Q	A	E	W	E	L	V	C	A	K	W	Q	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S														T	T