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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5d4dP_

Fold library idPDB HeaderMoleculeTitle
c5d4dP_3.00PDB header: transcription/dnaChain: P: PDB Molecule: rna polymerase sigma factor siga;


Added to library: Sat Jul 9 08:29:49 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGL
Predicted secondary structure











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Known secondary structure (DSSP)

SSS






S
SS




TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KETLDPKTVEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGN
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Known secondary structure (DSSP) SS


TTS
TGGGTTSSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence QGLIRAVEKFEYKRRFKFSTYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPT
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Known secondary structure (DSSP)

GGG


S
SS


SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence YEEIAEAMGPGWDAKRVEETLKIAQEPVSLETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKR
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Known secondary structure (DSSP) T
TT

T




TTSB
SSSTT
BGGGS



SS



 .........290.........300.........310......
Sequence EAMVLKLERIRQIENKALRKLKYHESRTRKLRDFLD
Predicted secondary structure


SS confidence



































Known secondary structure (DSSP)
S


TT
SGGGGG


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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