PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5d28A_

Fold library id	PDB Header	Molecule	Title
c5d28A_	2.85	PDB header: viral protein	Chain: A: PDB Molecule: gm-csf/il-2 inhibition factor;

Links to external resources
Added to library: Thu Feb 9 11:06:11 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q W I G E R D F C T A H A Q D V F A R L Q V W M R I D R N V T A A D N S S A C A L A I E T P P S N F D A D V Y V A A A G I N V S V S A I N C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
B
T T T S
T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G F F N M R Q V E T T Y N T A R R Q M Y V Y M D S W D P W V I D D P Q P L F S Q E Y E N E T L P Y L L E V L E L A R L Y I R V G C T V P G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
G G G S S S
S B
S T T
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q P F E V I P G I D Y P H T G M E F L Q H V L R P N R R F A P A K L H M D L E V D H R C V S A V H V K A F L Q D A C S A R K A R T P L Y F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
T T
T T S
T T T T T G G G
S
S

. . . . . . . . . 220 . . . . . . . . . 230 .

Sequence G H G C N H P D S P I S R K C S M Q T A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	W	I	G	E	R	D	F	C	T	A	H	A	Q	D	V	F	A	R	L	Q	V	W	M	R	I	D	R	N	V	T	A	A	D	N	S	S	A	C	A	L	A	I	E	T	P	P	S	N	F	D	A	D	V	Y	V	A	A	A	G	I	N	V	S	V	S	A	I	N	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									T	T	T		B														T	T	T	S														T	T											T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	F	F	N	M	R	Q	V	E	T	T	Y	N	T	A	R	R	Q	M	Y	V	Y	M	D	S	W	D	P	W	V	I	D	D	P	Q	P	L	F	S	Q	E	Y	E	N	E	T	L	P	Y	L	L	E	V	L	E	L	A	R	L	Y	I	R	V	G	C	T	V	P	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S	S											G	G	G	S	S	S				S	B		S	T	T																										T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	P	F	E	V	I	P	G	I	D	Y	P	H	T	G	M	E	F	L	Q	H	V	L	R	P	N	R	R	F	A	P	A	K	L	H	M	D	L	E	V	D	H	R	C	V	S	A	V	H	V	K	A	F	L	Q	D	A	C	S	A	R	K	A	R	T	P	L	Y	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S														T	T	T		T	T							T	T	S												T	T	T													T	T	G	G	G		S			S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.
Sequence	G	H	G	C	N	H	P	D	S	P	I	S	R	K	C	S	M	Q	T	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)