PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5d1wD_

Fold library id	PDB Header	Molecule	Title
c5d1wD_	PDB header: transcription	Chain: D: PDB Molecule: rv3249c transcriptional regulator;	PDBTitle: crystal structure of mycobacterium tuberculosis rv3249c2 transcriptional regulator.

Links to external resources
Added to library: Sat Oct 3 10:19:52 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence I P Y A E A S R A L L R D S V L D A M R D L L L T R D W S A I T L S D V A R A A G I S R Q T I Y N E F G S R Q G L A Q G Y A L R L A D R L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
G G G
T
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D N V H A S L D A N V G N F Y E A F L Q G F R S F F A E S A A D P L V I S L L T G V A K P D L L Q L I T T D S A P I I T R A S A R L A P A F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S T T
T T S T S S
T T T
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . .

Sequence T D T W V A T T D N D A N V L S R A I V R L C L S Y V S M P P E A D H D V A A D L A R L I T P F A E R H G V I N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
B
S
T T S
T B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	I	P	Y	A	E	A	S	R	A	L	L	R	D	S	V	L	D	A	M	R	D	L	L	L	T	R	D	W	S	A	I	T	L	S	D	V	A	R	A	A	G	I	S	R	Q	T	I	Y	N	E	F	G	S	R	Q	G	L	A	Q	G	Y	A	L	R	L	A	D	R	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																							T	T	T	S		G	G	G											T										T		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	N	V	H	A	S	L	D	A	N	V	G	N	F	Y	E	A	F	L	Q	G	F	R	S	F	F	A	E	S	A	A	D	P	L	V	I	S	L	L	T	G	V	A	K	P	D	L	L	Q	L	I	T	T	D	S	A	P	I	I	T	R	A	S	A	R	L	A	P	A	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T						T	S	S	T	T																		T	T	S								T	S	S										T	T	T													T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
Sequence	T	D	T	W	V	A	T	T	D	N	D	A	N	V	L	S	R	A	I	V	R	L	C	L	S	Y	V	S	M	P	P	E	A	D	H	D	V	A	A	D	L	A	R	L	I	T	P	F	A	E	R	H	G	V	I	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	S	S	S		B																						S				T	T	S																	T	B