PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5d1rA_

Fold library id	PDB Header	Molecule	Title
c5d1rA_	PDB header: transcription	Chain: A: PDB Molecule: rv1816 transcriptional regulator;	PDBTitle: crystal structure of mycobacterium tuberculosis rv1816 transcriptional2 regulator.

Links to external resources
Added to library: Sat Oct 3 09:54:48 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A R E Q I E A K I V E L G R R Q L L D H G A A G L S L R A I A R N L G M V S S A V Y R Y V S S R D E L L T L L L V D A Y S D L A D T V D R A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T T
T T
T T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R D D T V A D S W S D D V I A I A R A V R G W A V T N P A R W A L L Y G S P V P G Y H A P P D R T A G V A T R V V G A F F D A I A A G I A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S S
S S
T T
T T G G G T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G D I R L T D D V A P Q P M S S D F E K I R Q E F G F P G D D R V V T K C F L L W A G V V G A I S L E V F G Q Y G A D M L T D P G V V F D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S
S T T T
T T S S
S S S
S

. . . . . . . . . 220 . . . . . . .

Sequence Q T R L L V A V L A E H H H H H H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	R	E	Q	I	E	A	K	I	V	E	L	G	R	R	Q	L	L	D	H	G	A	A	G	L	S	L	R	A	I	A	R	N	L	G	M	V	S	S	A	V	Y	R	Y	V	S	S	R	D	E	L	L	T	L	L	L	V	D	A	Y	S	D	L	A	D	T	V	D	R	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					T	T	T	T										T	T							T	T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	D	D	T	V	A	D	S	W	S	D	D	V	I	A	I	A	R	A	V	R	G	W	A	V	T	N	P	A	R	W	A	L	L	Y	G	S	P	V	P	G	Y	H	A	P	P	D	R	T	A	G	V	A	T	R	V	V	G	A	F	F	D	A	I	A	A	G	I	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T			S	S																				S									S				T	T									T	T	G	G	G																T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	D	I	R	L	T	D	D	V	A	P	Q	P	M	S	S	D	F	E	K	I	R	Q	E	F	G	F	P	G	D	D	R	V	V	T	K	C	F	L	L	W	A	G	V	V	G	A	I	S	L	E	V	F	G	Q	Y	G	A	D	M	L	T	D	P	G	V	V	F	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S	S								S	T	T													T																											T	T	S	S		S	S	S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Sequence	Q	T	R	L	L	V	A	V	L	A	E	H	H	H	H	H	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T