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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5d1pB_

Fold library idPDB HeaderMoleculeTitle
c5d1pB_2.20PDB header: ligaseChain: B: PDB Molecule: atp-dependent rna ligase;


Added to library: Sat Mar 12 09:54:07 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DIPFDLIQERTGVPSSRLKVAFARGSLRLLESAGMQALLFKKPLGDLEAGTVIYLGDETEVIRGFPKIRR
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Known secondary structure (DSSP)





TTSS
SSS

SS
BTTB
TT
SSS





 .........80.........90.........100.........110.........120.........130.........140
Sequence TLLLSPTIQEHFRDRVAVEEMNGYNVRIACLSSGETVALTRGGHVCPFTTRKAQELLDLSEFFREHPDLV
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Known secondary structure (DSSP)
S
STT

S


S
TTS

TTS
B




TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ICGEMIGRDNPYVSQDYPEVGPLGFRVFDLREKNTNRPLPVEERRALLDSYGLPNVRLFGVYPIEEAASE
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Known secondary structure (DSSP) SSS
SS




GGGTTSTTT

B

TT

B

 .........220.........230.........240.........250.........260.........270.........280
Sequence VADIIRALGMAGREGVVMKDPSMEVPPLKYTSSQAHARELAYAFSYPFDFGRPFFFSRVIREGFQAYELD
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Known secondary structure (DSSP) T


TT
SS


SGGGS
S
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence ESDDETRERARRLGEAIIYPMLERIKSISAGEAAYEDTVIDVEDREAAEEFIRHLVRLGVSATLADYRDG
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Known secondary structure (DSSP)
STT



SSTT

TT
 .........360.........370....
Sequence RATIRRFYQSTTDRINNYLKGGLY
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Known secondary structure (DSSP)
TT



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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