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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5cx8A_

Fold library idPDB HeaderMoleculeTitle
c5cx8A_PDB header: membrane proteinChain: A: PDB Molecule: lipoprotein ragb;PDBTitle: structure of ragb, a major immunodominant virulence factor of2 porphyromonas gingivalis.


Added to library: Sat Oct 24 14:13:58 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence DFQQPYTSFVQTKQNRDGLYALLRNTENPRXHFYQELQSDXYCTTITDGNSLAPFVNWDLGILNDHGRAD
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Known secondary structure (DSSP)

SS


STTS
GGGSTSSSBTT

SSSTT
TT

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EDEVSGIAGYYFVYNRLNQQANAFVNNTEAALQNQVYKNSTEIANAKSFLAEGKVLQALAIWRLXDRFSF
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Known secondary structure (DSSP) SS
TT

SSS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HESVTEVNSGAKDLGVILLKEYNPGYIGPRATKAQCYDYILSRLSEAIEVLPENRESVLYVSRDYAYALR
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Known secondary structure (DSSP)
TT

S
STT
TTB





S

TT





BTTS
SS
S
TTS

 .........220.........230.........240.........250.........260.........270.........280
Sequence ARIYLALGEYGKAAADAKXVVDKYPLIGAADASEFENIYRSDANNPEIIFRGFASATLGSFTATTLNGAA
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Known secondary structure (DSSP) T
TTTTTS




SST
TTT
TT


BTTTB


TTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence PAGKDIKYNPSAVPFQWVVDLYENEDFRKSVYIAKVVKKDKGYLVNKFLEDKAYRDVQDKPNLKVGARYF
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Known secondary structure (DSSP) TT

S
TS
TT
GGGGTTTTTT
TTS

GGG
SBTTB




 .........360.........370.........380.........390.........400.........410.........420
Sequence SVAEVYLILVESALQTGDTPTAEKYLKALSKARGAEVSVVNXEALQAERTRELIGEGSRLRDXVRWSIPN
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Known secondary structure (DSSP) TT
TT


SS
STTSS
TT


 .........430.........440.........450.........460.........470..
Sequence NHDAFETQPGLEGFANTTPLKAQAPVGFYAYTWEFPQRDRQTNPQLIKNWPI
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Known secondary structure (DSSP)
GGG



GGGBTTB




SS


TT
GGGS




TT


S



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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