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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5cwwB_

Fold library idPDB HeaderMoleculeTitle
c5cwwB_PDB header: transport proteinChain: B: PDB Molecule: nucleoporin nup82;PDBTitle: crystal structure of the chaetomium thermophilum heterotrimeric nup822 ntd-nup159 tail-nup145n apd complex


Added to library: Sat Sep 19 08:19:47 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KIKSFAPAWLNEPAPGHKLFAPKPGPRRTIARRGTEIFVACGKQIRWGDLAQLKESWESRPSDDGAATAG
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Known secondary structure (DSSP)



SS
GGGSTTSGGGGGT



S

B
TTTTS




STTSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence YRIIKTPVADDIRQLVMSPNQDFLAVLTSHTVHICILPDSSHLHIQDTTPFKPKFWTLGPTTHVTSRSAV
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Known secondary structure (DSSP)


SS



TTSS
SS



GGGGSTT

S




S
TTTSSTTS

 .........150.........160.........170.........180.........190.........200.........210
Sequence VSAVWHPLGVNGHALVTVTEDAIVRVWELSTADRWTFDAPTLAIDLKKLADATYLDQDFGVSTSATNKGF
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Known secondary structure (DSSP)
TTBGGG
TT


TT
TS
ST

STTS




SS

S


 .........220.........230.........240.........250.........260.........270.........280
Sequence SPDAFDMEVAAACFPTRDSGGWAPMTLWLAMTSGDVYALCPLLPQRWTPPPTLIPSLSASIVAKVAAAED
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Known secondary structure (DSSP)
TT



SS

TTGGG
TTS
TT


S


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NPESTPEERLVAQQQLEWMSEIDNQEPKLVEEATGEATIEVYTRPSRPGLVPKLQGPFDFDLNPEDEQDD
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Known secondary structure (DSSP)
TT

T




TT
S




SS
SS




T

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence EVELKDIYVIGEKPRNGLSLNIICLLSTSGQVKICLDIDGVEAQWLPPRSKNKRLFAPPPEPPSLLTFQT
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Known secondary structure (DSSP) S







SS
TT


SS








TTS


TTS





 .........430.........440.........450.........460.........470.........480.........490
Sequence FDTLKPAEVTPDGWPMFSEDATSPYSFYVTHPAGITYISLTPWVFRLESELQSDSEAGTEFRIDLLAKGQ
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Known secondary structure (DSSP)
SS
GGG

TT



SS
TTTT
TTT


SS
S
 .........500.........510.........520.........530........
Sequence GSERDRIFTQTRTQSPLAAATSIDDPDLGYFILSATQTDPIALFFETP
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Known secondary structure (DSSP)
S

S







TTT
SS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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