PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5cwsJ_

Fold library id	PDB Header	Molecule	Title
c5cwsJ_	PDB header: protein transport	Chain: J: PDB Molecule: nucleoporin nup49;	PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site

Links to external resources
Added to library: Sat Oct 17 08:25:08 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S E A L Q Q E I A K I D E E I Q K C I R D K E A V D A F L P A H G E Q L A A I P T D V N F V T R K S E G A H N A L S S D I L A I D Q L R E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V K Q D A D N A R L S F K A I D N L K L S N A D L I S Y F S K T A D E M E E M M K K F E K T I T E I E A H L T G V E A H A M A M Q N V A V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180

Sequence E R V Y E L A A V L R E F E E S I L K V A G V V G G V K E G V T E L Q L R D F M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	E	A	L	Q	Q	E	I	A	K	I	D	E	E	I	Q	K	C	I	R	D	K	E	A	V	D	A	F	L	P	A	H	G	E	Q	L	A	A	I	P	T	D	V	N	F	V	T	R	K	S	E	G	A	H	N	A	L	S	S	D	I	L	A	I	D	Q	L	R	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	K	Q	D	A	D	N	A	R	L	S	F	K	A	I	D	N	L	K	L	S	N	A	D	L	I	S	Y	F	S	K	T	A	D	E	M	E	E	M	M	K	K	F	E	K	T	I	T	E	I	E	A	H	L	T	G	V	E	A	H	A	M	A	M	Q	N	V	A	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence	E	R	V	Y	E	L	A	A	V	L	R	E	F	E	E	S	I	L	K	V	A	G	V	V	G	G	V	K	E	G	V	T	E	L	Q	L	R	D	F	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)