PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5cwsE_

Fold library id	PDB Header	Molecule	Title
c5cwsE_	PDB header: protein transport	Chain: E: PDB Molecule: nucleoporin nup57;	PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site

Links to external resources
Added to library: Sat Oct 17 08:46:43 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence P I P E Q I K L I V D K W N P N H P N C A F K T Y L Y N K V D E H T V P L Y G P G P N E D P K E W E E A L Q R K P A P N F I P V L C S G F P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
S S
S
T T
T T
T T
T
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S I V A R L M L Q R R V I T E F N N K L H Q I N A S L D A I L S R H D L D H T V R A F N A R R R H A E L S R R C L H L A A R V Q V L R N R G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y A L S G D E D E L K Q K L Q Q I D K T L N D P A Q G S R L E E L W S R L I V L R G Y A E D L K D Q I N Q A G I T E S D G L G E E I E A K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S
T
S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 .

Sequence K K I L E D Y D K Q L Q H L K K Q V E E A K K D F E E W E K Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	P	I	P	E	Q	I	K	L	I	V	D	K	W	N	P	N	H	P	N	C	A	F	K	T	Y	L	Y	N	K	V	D	E	H	T	V	P	L	Y	G	P	G	P	N	E	D	P	K	E	W	E	E	A	L	Q	R	K	P	A	P	N	F	I	P	V	L	C	S	G	F	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S	T	T		S	S		S											T	T		T	T						T	T												T		S	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	I	V	A	R	L	M	L	Q	R	R	V	I	T	E	F	N	N	K	L	H	Q	I	N	A	S	L	D	A	I	L	S	R	H	D	L	D	H	T	V	R	A	F	N	A	R	R	R	H	A	E	L	S	R	R	C	L	H	L	A	A	R	V	Q	V	L	R	N	R	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																																			T	T		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	A	L	S	G	D	E	D	E	L	K	Q	K	L	Q	Q	I	D	K	T	L	N	D	P	A	Q	G	S	R	L	E	E	L	W	S	R	L	I	V	L	R	G	Y	A	E	D	L	K	D	Q	I	N	Q	A	G	I	T	E	S	D	G	L	G	E	E	I	E	A	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S				S	S																S																													T				S										S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Sequence	K	K	I	L	E	D	Y	D	K	Q	L	Q	H	L	K	K	Q	V	E	E	A	K	K	D	F	E	E	W	E	K	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T	T