PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5cwsC_

Fold library id	PDB Header	Molecule	Title
c5cwsC_	PDB header: protein transport	Chain: C: PDB Molecule: nucleoporin nsp1;	PDBTitle: crystal structure of the intact chaetomium thermophilum nsp1-nup49-2 nup57 channel nucleoporin heterotrimer bound to its nic96 nuclear3 pore complex attachment site

Links to external resources
Added to library: Sat Oct 17 09:12:45 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D E I I T R W A T D L A K Y Q K E F K E Q A A K V M E W D R L L V E N G E K I Q K L Y T S T Y E A E R A S N E I E R Q L S N V E S Q Q E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L T A W L D R Y E R E L D E L Y A K Q M G E R T Y K L A E K L T D Q L D E M G K D L A K M I K E I N D M S N T L S K G S K P D D P L T Q I V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . .

Sequence R V L N G H L A Q L Q W I D T N A A A L Q A K V A A A Q K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	E	I	I	T	R	W	A	T	D	L	A	K	Y	Q	K	E	F	K	E	Q	A	A	K	V	M	E	W	D	R	L	L	V	E	N	G	E	K	I	Q	K	L	Y	T	S	T	Y	E	A	E	R	A	S	N	E	I	E	R	Q	L	S	N	V	E	S	Q	Q	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	T	A	W	L	D	R	Y	E	R	E	L	D	E	L	Y	A	K	Q	M	G	E	R	T	Y	K	L	A	E	K	L	T	D	Q	L	D	E	M	G	K	D	L	A	K	M	I	K	E	I	N	D	M	S	N	T	L	S	K	G	S	K	P	D	D	P	L	T	Q	I	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																												S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Sequence	R	V	L	N	G	H	L	A	Q	L	Q	W	I	D	T	N	A	A	A	L	Q	A	K	V	A	A	A	Q	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										G	G	G