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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ctqD_

Fold library idPDB HeaderMoleculeTitle
c5ctqD_2.60PDB header: immune system, nuclear protein, rna bindChain: D: PDB Molecule: squamous cell carcinoma antigen recognized by t-cells 3;


Added to library: Sat Apr 30 08:54:55 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NQLEIERLEEQLSINVYDYNCHVDLIRLLRLEGELTKVRMARQKMSEIFPLTEELWLEWLHDEISMAQDG
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Known secondary structure (DSSP)

TT
T
TTS




S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LDREHVYDLFEKAVKDYICPNIWLEYGQYSVGGIGQKGGLEKVRSVFERALSSVGLHMTKGLALWEAYRE
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Known secondary structure (DSSP) S

GGGSSSTTTT
TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence FESAIVEAARLEKVHSLFRRQLAIPLYDMEATFAEYEEWSEDPIPESVIQNYNKALQQLEKYKPYEEALL
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Known secondary structure (DSSP) S

SSSTS

TTT
SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence QAEAPRLAEYQAYIDFEMKIGDPARIQLIFERALVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIR
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Known secondary structure (DSSP) S
SS
T

TT
TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence NCPWTVALWSRYLLAMERHGVDHQVISVTFEKALNAGFIQATDYVEIWQAYLDYLRRRVDFKQDSSKELE
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Known secondary structure (DSSP)
TT
TT

TT

S
TT

TTSSS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ELRAAFTRALEYLKQEVEERFNESGDPSCVIMQNWARIEARLCNNMQKARELWDSIMTRGNAKYANMWLE
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Known secondary structure (DSSP) TSS
S
TT
TSS
TTTTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence YYNLERAHGDTQHCRKALHRAVQCTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKA
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Known secondary structure (DSSP) S


S
TS
 .........500..
Sequence AEKEAALVQQEE
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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