PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5cthB_

Fold library id	PDB Header	Molecule	Title
c5cthB_	PDB header: transport protein	Chain: B: PDB Molecule: bidirectional sugar transporter sweet2b;	PDBTitle: the 3.7 a resolution structure of a eukaryotic sweet transporter

Links to external resources
Added to library: Sat Oct 31 08:23:06 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S L Y D I S C F A A G L A G N I F A L A L F L S P V T T F K R I L K A K S T E R F D G L P Y L F S L L N C L I C L W Y G L P W V A D G R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G
S S
S S T T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V A T V N G I G A V F Q L A Y I C L F I F Y A D S R K T R M K I I G L L V L V V C G F A L V S H A S V F F F D Q P L R Q Q F V G A V S M A S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L I S M F A S P L A V M G V V I R S E S V E F M P F Y L S L S T F L M S A S F A L Y G L L L R D F F I Y F P N G L G L I L G A M Q L A L Y A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T
T

. . . . .

Sequence Y Y S S N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	L	Y	D	I	S	C	F	A	A	G	L	A	G	N	I	F	A	L	A	L	F	L	S	P	V	T	T	F	K	R	I	L	K	A	K	S	T	E	R	F	D	G	L	P	Y	L	F	S	L	L	N	C	L	I	C	L	W	Y	G	L	P	W	V	A	D	G	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T									G	G	G			S	S				S																	S	T	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	A	T	V	N	G	I	G	A	V	F	Q	L	A	Y	I	C	L	F	I	F	Y	A	D	S	R	K	T	R	M	K	I	I	G	L	L	V	L	V	V	C	G	F	A	L	V	S	H	A	S	V	F	F	F	D	Q	P	L	R	Q	Q	F	V	G	A	V	S	M	A	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S	S																															T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	I	S	M	F	A	S	P	L	A	V	M	G	V	V	I	R	S	E	S	V	E	F	M	P	F	Y	L	S	L	S	T	F	L	M	S	A	S	F	A	L	Y	G	L	L	L	R	D	F	F	I	Y	F	P	N	G	L	G	L	I	L	G	A	M	Q	L	A	L	Y	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T														T			T	T																								T
	.	.	.	.	.
Sequence	Y	Y	S	S	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)