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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5cq9A_

Fold library idPDB HeaderMoleculeTitle
c5cq9A_PDB header: cell invasionChain: A: PDB Molecule: secreted effector protein sopd2;PDBTitle: crystal structure of sopd2, a type iii secreted virulence effector2 from salmonella enterica


Added to library: Sat Sep 12 08:15:51 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence VWDRFKDCFRTHKKQEVLEVLYTLIHGTGMEKIHAFTQLKEYANPSQQDRFVMRFDMNQTQVLFEIDGKV
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Known secondary structure (DSSP)
T




SS
TTSGGG
TTSSTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence IDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISRYPELLEGFANKLKDAVNEDDDVKDEVYK
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Known secondary structure (DSSP) TT

TT







GGG
SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence LMRSGEDRKMECVEWNGTLTEEEKNKLRCLQMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYK
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Known secondary structure (DSSP) TTT

TTS







TGGGGTT


TTTTTTTTT

S

 .........220.........230.........240.........250.........260.........
Sequence PSLDLIETNTMLFSDVLNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLI
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Known secondary structure (DSSP)





TTTTS


BTTB


S


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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