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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5cpcA_

Fold library idPDB HeaderMoleculeTitle
c5cpcA_PDB header: cell invasionChain: A: PDB Molecule: secreted effector protein sopd;PDBTitle: crystal structure of sopd, a type iii secreted virulence effector from2 salmonella enterica


Added to library: Sat Sep 12 08:16:21 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence KAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDAS
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Known secondary structure (DSSP)



GGGGGGS
GGG




B

S
GGGGGG
TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence QTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEV
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Known secondary structure (DSSP) S
TTTT

SS







T
 .........150.........160.........170.........180.........190.........200.........210
Sequence TGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMM
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Known secondary structure (DSSP) T
STTS
TT








GGGGTT


TTTTTTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence HPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILL
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Known secondary structure (DSSP)
T


BTT
TTTS


STT



SS
 .
Sequence T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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