PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5ck3D_

Fold library id	PDB Header	Molecule	Title
c5ck3D_	PDB header: signaling protein	Chain: D: PDB Molecule: putative signal recognition particle protein;	PDBTitle: signal recognition particle receptor srb-gtp/srx complex from2 chaetomium thermophilum

Links to external resources
Added to library: Sat Sep 12 08:23:27 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y T T L P S V L L I G P S G A G K T A L L T L F E R G P L L N P D G T S L K N P Y R K P I V T S P V A Q T H T S Q V P T S V E L A V G A N E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S S
T T T
S T T
S S S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P T S Y K V D L T A R K F L L I D T P G H P K L R G T T L Q H L L N P S P P Y K S K L K A V I F L L D A A A L A D S D G D Y L S Q T A S Y L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T T
T T T T T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y D V L L S L Q K R F H S S I P V L I A A N K Q D L F T A V P A S L V K S R L E H E L G R I R K T R Q K F K F E E M M E F D M E V E V M G G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S T T
T T T

. . . . . . . . . 220 . . . . . . . . . 230

Sequence N V I G D G P G A E R W W R W I G E R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S S
S T T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	T	T	L	P	S	V	L	L	I	G	P	S	G	A	G	K	T	A	L	L	T	L	F	E	R	G	P	L	L	N	P	D	G	T	S	L	K	N	P	Y	R	K	P	I	V	T	S	P	V	A	Q	T	H	T	S	Q	V	P	T	S	V	E	L	A	V	G	A	N	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													T	T	S												S	S	S			T	T	T					S	T	T						S	S	S	S								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	T	S	Y	K	V	D	L	T	A	R	K	F	L	L	I	D	T	P	G	H	P	K	L	R	G	T	T	L	Q	H	L	L	N	P	S	P	P	Y	K	S	K	L	K	A	V	I	F	L	L	D	A	A	A	L	A	D	S	D	G	D	Y	L	S	Q	T	A	S	Y	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T																S	T	T	T																												T	T	T	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	D	V	L	L	S	L	Q	K	R	F	H	S	S	I	P	V	L	I	A	A	N	K	Q	D	L	F	T	A	V	P	A	S	L	V	K	S	R	L	E	H	E	L	G	R	I	R	K	T	R	Q	K	F	K	F	E	E	M	M	E	F	D	M	E	V	E	V	M	G	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T													T	T	S	T	T																																T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Sequence	N	V	I	G	D	G	P	G	A	E	R	W	W	R	W	I	G	E	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	S	S	S		S									T	T