PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5cfkB_

Fold library id	PDB Header	Molecule	Title
c5cfkB_	PDB header: dna binding protein	Chain: B: PDB Molecule: proliferating cell nuclear antigen,proliferating cell	PDBTitle: crystal structure of proliferating cell nuclear antigen from2 leishmania donovani at 3.2 a resolution

Links to external resources
Added to library: Sat Oct 10 08:16:40 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M L E A Q V Q F A S L W K R L V E C I N G L V N E A N F D C N P G G L S V Q A M D S S H V A L V H M L L R D D C F V K Y Q C G R N S I L G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
S T T
T T S S G G G
S
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N L A S L S K V L K I V D S N D S L S L R H D D D S D V V T L T S E N P E K T R K C E Y Q L K L L E I E A E S M G I P E M D Y R S T V T L N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T T S
T T
S
S S S S
B
S
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S A E F A K I V R D M Q V F G D T V T I A I S K E G V K F S S S G D V G Q G Y T F L Q A A G V S D R G V E V T M E E P I T L S F A L R F M G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S T T S S S
S
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . .

Sequence I F A K G S T L S E R V T L K F A K D S P C M V E Y G I D N V G Y L R Y Y L A P K V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G G T
S T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	L	E	A	Q	V	Q	F	A	S	L	W	K	R	L	V	E	C	I	N	G	L	V	N	E	A	N	F	D	C	N	P	G	G	L	S	V	Q	A	M	D	S	S	H	V	A	L	V	H	M	L	L	R	D	D	C	F	V	K	Y	Q	C	G	R	N	S	I	L	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S		T												T	T		S								T	T									T	T	S	S									G	G	G		S					S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	L	A	S	L	S	K	V	L	K	I	V	D	S	N	D	S	L	S	L	R	H	D	D	D	S	D	V	V	T	L	T	S	E	N	P	E	K	T	R	K	C	E	Y	Q	L	K	L	L	E	I	E	A	E	S	M	G	I	P	E	M	D	Y	R	S	T	V	T	L	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S		T	T	S								T	T		S									S	S	S	S										B							S							S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	A	E	F	A	K	I	V	R	D	M	Q	V	F	G	D	T	V	T	I	A	I	S	K	E	G	V	K	F	S	S	S	G	D	V	G	Q	G	Y	T	F	L	Q	A	A	G	V	S	D	R	G	V	E	V	T	M	E	E	P	I	T	L	S	F	A	L	R	F	M	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T		S								T	T								S	S	S													S									S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
Sequence	I	F	A	K	G	S	T	L	S	E	R	V	T	L	K	F	A	K	D	S	P	C	M	V	E	Y	G	I	D	N	V	G	Y	L	R	Y	Y	L	A	P	K	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	G	T		S								T	T										T	T	T