PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ca5A_

Fold library id	PDB Header	Molecule	Title
c5ca5A_	PDB header: rna binding protein	Chain: A: PDB Molecule: nono-1;	PDBTitle: structure of the c. elegans nono-1 homodimer

Links to external resources
Added to library: Sat Dec 12 08:30:26 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E V P K K K F T G R C R L F V G N L P N E V K E T E L K E L F S P H G D I A E C Y L S G K G F A F L R L D T R A H A E S A K E A I D G R I I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G S
T T
G G G
S S S
S S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H G R Q V R V R F A V H G A A I R V K E L S P T V S N E M L Y H A F S H F G D V E R A V H I V D E K G R P T G E G I V E F E R K P N C N E A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T
T T T S
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M A A I R D K V F L L T A S P K P L I C E V L E P R D E D D G L A E R M I P R T P G L S K E R E L G P R F P T P N S F E Y V Y G M K W K E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S S
S S S
G G G S
T T S
S
T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . .

Sequence Y V V E Q K R R A Q L D E E L R E S R R R L E S D M E L A Y Q D Y Q A Q M L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	V	P	K	K	K	F	T	G	R	C	R	L	F	V	G	N	L	P	N	E	V	K	E	T	E	L	K	E	L	F	S	P	H	G	D	I	A	E	C	Y	L	S	G	K	G	F	A	F	L	R	L	D	T	R	A	H	A	E	S	A	K	E	A	I	D	G	R	I	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S		G	G	G						S			T	T											G	G	G										S	S	S							S	S												T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	G	R	Q	V	R	V	R	F	A	V	H	G	A	A	I	R	V	K	E	L	S	P	T	V	S	N	E	M	L	Y	H	A	F	S	H	F	G	D	V	E	R	A	V	H	I	V	D	E	K	G	R	P	T	G	E	G	I	V	E	F	E	R	K	P	N	C	N	E	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																		S			T	T											T	T	T	S											T	T												S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	A	A	I	R	D	K	V	F	L	L	T	A	S	P	K	P	L	I	C	E	V	L	E	P	R	D	E	D	D	G	L	A	E	R	M	I	P	R	T	P	G	L	S	K	E	R	E	L	G	P	R	F	P	T	P	N	S	F	E	Y	V	Y	G	M	K	W	K	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S				S	S	S	S														S	S	S				G	G	G	S										T	T	S		S					T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Sequence	Y	V	V	E	Q	K	R	R	A	Q	L	D	E	E	L	R	E	S	R	R	R	L	E	S	D	M	E	L	A	Y	Q	D	Y	Q	A	Q	M	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																					T