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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5c76D_

Fold library idPDB HeaderMoleculeTitle
c5c76D_PDB header: transport proteinChain: D: PDB Molecule: wlab protein;PDBTitle: atp-driven lipid-linked oligosaccharide flippase pglk in apo-inward2 facing state (2)


Added to library: Sat Aug 22 11:35:58 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MVKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLVMPFITLASDFSYFDRNKYLISLKEYLNIPVFE
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Known secondary structure (DSSP)

TTS
TTSSSS
SSSS
TTTTS

SST
 .........80.........90.........100.........110.........120.........130.........140
Sequence IIVYFGVGLIVFYVFRALLNAYYFHLLARFSKGRKHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEV
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Known secondary structure (DSSP) TTS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence YNLSTMISSFLLLMSEIFVVLLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGLRREEAMKN
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Known secondary structure (DSSP) TTTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence FFEILNTNLNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVVFLVL
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Known secondary structure (DSSP) TTT


TSTTS
 .........290.........300.........310.........320.........330.........340.........350
Sequence KNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLNIIYQNLRQEEENLGEGKLSFNQELK
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Known secondary structure (DSSP) S



TTSTSS










SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLVDLIIGLLKPKEGQILIDKQELNASNAKN
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Known secondary structure (DSSP)







SS


S
SS


B

TT

SSSSSSS
S

SS


SS
B

SST
 .........430.........440.........450.........460.........470.........480.........490
Sequence YRQKIGYIPQNIYLFNDSIAKNITFGDAVDEEKLNKVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQK
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Known secondary structure (DSSP) TB



SS



SS
TTTTTTTTS


STT
TTSSS
TT



SSSSSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence QRIAIARALYLEPEILVLDQATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKL
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Known secondary structure (DSSP) TT

S


S



TTTSSSS

SSSSS
TT
STT
 ....
Sequence KEEK
Predicted secondary structure
SS confidence



Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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