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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5c0wJ_

Fold library idPDB HeaderMoleculeTitle
c5c0wJ_PDB header: hydrolase/rnaChain: J: PDB Molecule: exosome complex exonuclease dis3;PDBTitle: structure of a 12-subunit nuclear exosome complex bound to single-2 stranded rna substrates


Added to library: Sat Aug 1 08:32:26 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RRKRLADGLSVTQKVFVRSRNGGATKIVREHYLRSDIPCLSRSCTKCPQIVVPDAQNELPKFILSDSPLE
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Known secondary structure (DSSP)


TTS
TTBS




BSS
S



SS






B
SS

 .........80.........90.........100.........110.........120.........130.........140
Sequence LSAPIGKHYVVLDTNVVLQAIDLLENPNCFFDVIVPQIVLDEVRNKSYPVYTRLRTLCRDSDDHKRFIVF
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Known secondary structure (DSSP) TTTT
TTTTS
TTS


S

SS
 .........150.........160.........170.........180.........190.........200.........210
Sequence HNEFSEHTFVERLPNETINDRNNRAIRKTCQWYSEHLKPYDINVVLVTNDRLNREAATKEVESNIITKSL
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Known secondary structure (DSSP)

TTBSSS




TT

TGGGT


TT
SS


 .........220.........230.........240.........250.........260.........270.........280
Sequence VQYIELLPNADDIRDSIPQMTFSDFTFPEYYSTARVMGGLKNGVLYQGNIQISEYNFLEGSVSLPRFSKP
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Known secondary structure (DSSP) TTSS
TTS














T


SSBTT

TT
SS
 .........290.........300.........310.........320.........330.........340.........350
Sequence VLIVGQKNLNRAFNGDQVIVELLPQSEWKAPSSIVLDSEHFDVNDNPDINTTVISDKQRRLLAKDAMIAQ
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Known secondary structure (DSSP) STT

TT


GGG
B


S

B
GGGSSTT










 .........360.........370.........380.........390.........400.........410.........420
Sequence RSKKIQPTAKVVYIQRRSWRQYVGQLAPSSVDPQSSSTQNVFVILMDKCLPKVRIRTRRAAELLDKRIVI
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Known secondary structure (DSSP)
S

B
B




GGG

TT

S
SSSSS

TTTTGGGG
 .........430.........440.........450.........460.........470.........480.........490
Sequence SIDSWPTTHKYPLGHFVRDLGTIESAQAETEALLLEHDVEYRPFSKKVLECLPAEGHDWKAPTKLDDPEA
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Known secondary structure (DSSP)

TT
SS
SS
TT


S


S
TTGGG



SSTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence VSKDPLLTKRKDLRDKLICSIDPPGCVDINDALHAKKLPNGNWEVGVHIADVTHFVKPGTALDAEGAARG
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Known secondary structure (DSSP)
GGGGG

TTS


TT

S


TTS

S
TTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence TSVYLVDKRIDMLPMLLGTDLCSLKPYVDRFAFSVIWELDDSANIVNVNFMKSVIRSREAFSYEQAQLRI
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Known secondary structure (DSSP) B

SS

SS
TTTSS

BTS
TT


 .........640.........650.........660.........670.........680.........690.........700
Sequence DDKTQNDELTMGMRALLKLSVKLKQKRLEAGALNLASPEVKVHMDSETSDPNEVEIKKLLATNSLVEEFM
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Known secondary structure (DSSP) SSS


T








SSSS




 .........710.........720.........730.........740.........750.........760.........770
Sequence LLANISVARKIYDAFPQTAMLRRHAAPPSTNFEILNEMLNTRKNMSISLESSKALADSLDRCVDPEDPYF
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Known secondary structure (DSSP)
TTT
B



GGGGS




SST


SS
ST
 .........780.........790.........800.........810.........820.........830.........840
Sequence NTLVRIMSTRCMMAAQYFYSGAYSYPDFRHYGLAVDIYTHFTSPIRRYCDVVAHRQLAGAIGYEPLSLTH
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Known secondary structure (DSSP) S


GGGS
GGGG
BTTTTBS




S
TTTBTTSS


GGG
 .........850.........860.........870.........880.........890.........900.........910
Sequence RDKNKMDMICRNINRKHRNAQFAGRASIEYYVGQVMRNNESTETGYVIKVFNNGIVVLVPKFGVEGLIRL
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Known secondary structure (DSSP) G
T


SS
TTT


G
 .........920.........930.........940.........950.........960.........970
Sequence DNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPITSKRKAELLLK
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Known secondary structure (DSSP) GGT
S
GGG
TTTT

TT

S
TT





SSS







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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