PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5c0rA_

Fold library id	PDB Header	Molecule	Title
c5c0rA_	PDB header: viral protein/immune system	Chain: A: PDB Molecule: hemagglutinin, envelope glycoprotein, fibritin fusion	PDBTitle: crystal structure of a generation 3 influenza hemagglutinin stabilized2 stem complexed with the broadly neutralizing antibody c179

Links to external resources
Added to library: Sat Sep 5 08:20:10 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D T I C I G Y H A N N S T D T V D T V L E K N V T V T H S V N L G W G L R M V T G L R N I P Q A I A G F I E G G W T G M V D G W Y G Y H H Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
S
S S
S S S
S S S
S
B
S S S
B T T
S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N E Q G S G Y A A D Q K S T Q N A I N G I T N K V N S V I E K M G G W M E W D R E I N N Y T S I I Y S L I E E S Q N Q Q E N G I V Q Q Q N N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L L R A I E A Q Q H L L Q L T V W G I K Q L Q T Y N A E L L V L L E N E R T L D F H D S N V K N L Y E K V K S Q L K N N A K E I G N G C F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G
S S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270

Sequence F Y H K C N N E C M E S V K N G T Y D Y P K Y S E E S K L N R E K I G Y I P E A P R D G Q A Y V R K D G E W V L L S T F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T
T T T S
S S
T T G G G

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	T	I	C	I	G	Y	H	A	N	N	S	T	D	T	V	D	T	V	L	E	K	N	V	T	V	T	H	S	V	N	L	G	W	G	L	R	M	V	T	G	L	R	N	I	P	Q	A	I	A	G	F	I	E	G	G	W	T	G	M	V	D	G	W	Y	G	Y	H	H	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								B			S								S	S			S				S	S					S	S	S						S		B									S	S	S			B	T	T			S		S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	E	Q	G	S	G	Y	A	A	D	Q	K	S	T	Q	N	A	I	N	G	I	T	N	K	V	N	S	V	I	E	K	M	G	G	W	M	E	W	D	R	E	I	N	N	Y	T	S	I	I	Y	S	L	I	E	E	S	Q	N	Q	Q	E	N	G	I	V	Q	Q	Q	N	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S																																																									T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	L	R	A	I	E	A	Q	Q	H	L	L	Q	L	T	V	W	G	I	K	Q	L	Q	T	Y	N	A	E	L	L	V	L	L	E	N	E	R	T	L	D	F	H	D	S	N	V	K	N	L	Y	E	K	V	K	S	Q	L	K	N	N	A	K	E	I	G	N	G	C	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																																										G	G	G					S	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Sequence	F	Y	H	K	C	N	N	E	C	M	E	S	V	K	N	G	T	Y	D	Y	P	K	Y	S	E	E	S	K	L	N	R	E	K	I	G	Y	I	P	E	A	P	R	D	G	Q	A	Y	V	R	K	D	G	E	W	V	L	L	S	T	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S												T	T				T	T	T	S																				S	S							T	T					G	G	G