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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5byhM_

Fold library idPDB HeaderMoleculeTitle
c5byhM_PDB header: transferaseChain: M: PDB Molecule: rna polymerase sigma-54 factor;PDBTitle: crystal structure of escherichia coli rna polymerase - sigma542 holoenzyme complex


Added to library: Sat Sep 5 08:24:03 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence XTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVEAKEVEDRESLDTVELPLDASWDEIYTA
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Known secondary structure (DSSP)

S

S
STSSSS













SSS


SS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence GTPSGNGVDYQDDELPVYQGETTQTLQDYLXWQVELTPFTDTDRAIATSIVDAVDDTGYLTIQIEDIVDS
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Known secondary structure (DSSP) S
SSS


SSS
SSSS








TTS


SSB
TT

B

 .........150.........160.........170.........180.........190.........200.........210
Sequence IGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWLEEARLIISDHLDLLANHDFRT
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Known secondary structure (DSSP)
SSSSSTTTTTTSSS

S
TTTTTT

SSS

SS
TTTSSSSSSS
SS
 .........220.........230.........240.........250.........260.........270.........280
Sequence LMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLVRKVSGRWTVELNADSIPRLKINQQYA
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TT

S

















SSS

SSS
SS


SSS






TTSS





 .........290.........300.........310.........320.........330.........340.........350
Sequence AXGNSARNDADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYXKPXVLADIAQAV
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Known secondary structure (DSSP) SSSSS

SS
S


SS





SSSTT
 .........360.........370.........380.........390.........400.........410.........420
Sequence EXHESTISRVTTASSTAIRALVKKLIAAENPAKPLSDSKLTSXLSEQGIXVARRTVAKYRESLSIPPSNQ
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Known secondary structure (DSSP)




S

SSS


T



TT

TT

 .
Sequence R
Predicted secondary structure
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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