PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5bwjC_

Fold library id	PDB Header	Molecule	Title
c5bwjC_	PDB header: signaling protein	Chain: C: PDB Molecule: sensory transduction histidine kinase, putative;	PDBTitle: structural characterization and modeling of the borrelia burgdorferi2 hybrid histidine kinase hk1 periplasmic sensor

Links to external resources
Added to library: Sat Aug 1 08:44:55 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S K D I F K F K L V D Q F F P F Y Y K N N K G E Y E G L I F S I L D K W A K D N N A D I M V E H I D N L N E S E I E D E A I Y L G L T Y N V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T T T B
T T S
S T T S S
T T S
T T S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K L N D F F Y F K S E L A R S I S I L F F K N T F L S N F N I G V I K N T I Y E D I L R L K N V N T I F L A D N S Q E L V L A L K N D K V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T G G G T
G G G S
T T S T T
S
S S T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . .

Sequence Y I Y G D C K T L H Y I A N N F L S E D L V I F T G D V F Y S I K N R V A I S R N A P E I V K N L N L D L F S Y L M K M P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S T T
T T
T
G G G G S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	K	D	I	F	K	F	K	L	V	D	Q	F	F	P	F	Y	Y	K	N	N	K	G	E	Y	E	G	L	I	F	S	I	L	D	K	W	A	K	D	N	N	A	D	I	M	V	E	H	I	D	N	L	N	E	S	E	I	E	D	E	A	I	Y	L	G	L	T	Y	N	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S		B	T	T	T	B				T	T	S					S												T	T									S	S			T	T	S			T	T	S									T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	L	N	D	F	F	Y	F	K	S	E	L	A	R	S	I	S	I	L	F	F	K	N	T	F	L	S	N	F	N	I	G	V	I	K	N	T	I	Y	E	D	I	L	R	L	K	N	V	N	T	I	F	L	A	D	N	S	Q	E	L	V	L	A	L	K	N	D	K	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	G	G	G	T																					G	G	G	S						T	T	S									T	T		S						S	S										T	T	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Sequence	Y	I	Y	G	D	C	K	T	L	H	Y	I	A	N	N	F	L	S	E	D	L	V	I	F	T	G	D	V	F	Y	S	I	K	N	R	V	A	I	S	R	N	A	P	E	I	V	K	N	L	N	L	D	L	F	S	Y	L	M	K	M	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	S							S	T	T												T	T							T					G	G	G	G	S