PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5boiA_

Fold library id	PDB Header	Molecule	Title
c5boiA_	PDB header: unknown function	Chain: A: PDB Molecule: germination protein ypeb;	PDBTitle: bacillus megaterium ypeb c-terminal domain

Links to external resources
Added to library: Sat Aug 15 08:28:33 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G R E V S E D V A K Q V A R S F L N L K G N E Q I H I V K S G K D A D Y E V Y S L T I T D P K T N Q E T Y M D I T Q K G G Y P L W V L E D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T T
S
S S
S S
S S S
T B T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D I K K Q N I S L N D A M N K A T K F L K D H R F E S L V M A E S A Q Y D N M G V F T F V E Q T E S G V R I Y P D S V K M K M S L E D G S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S T T
T T
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I G F S A K D F L L K H R T R D I P K P K I S K E Q A K T K L N S N V K V M E E R L A I I T N D L N E E V L C Y E F L G T I K N D T Y R I F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S
T S
T T
T T S
T T

. . . . . . . . . 220 . . . . . .

Sequence I N A D T G F E E K V E K L Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	R	E	V	S	E	D	V	A	K	Q	V	A	R	S	F	L	N	L	K	G	N	E	Q	I	H	I	V	K	S	G	K	D	A	D	Y	E	V	Y	S	L	T	I	T	D	P	K	T	N	Q	E	T	Y	M	D	I	T	Q	K	G	G	Y	P	L	W	V	L	E	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B														T	T			S											S	S		S	S										S	S	S										T	B	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	I	K	K	Q	N	I	S	L	N	D	A	M	N	K	A	T	K	F	L	K	D	H	R	F	E	S	L	V	M	A	E	S	A	Q	Y	D	N	M	G	V	F	T	F	V	E	Q	T	E	S	G	V	R	I	Y	P	D	S	V	K	M	K	M	S	L	E	D	G	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S																T	T			S										T	T											T	T															T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	G	F	S	A	K	D	F	L	L	K	H	R	T	R	D	I	P	K	P	K	I	S	K	E	Q	A	K	T	K	L	N	S	N	V	K	V	M	E	E	R	L	A	I	I	T	N	D	L	N	E	E	V	L	C	Y	E	F	L	G	T	I	K	N	D	T	Y	R	I	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											S										S	S								T	S		T	T														T	T	S													T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	I	N	A	D	T	G	F	E	E	K	V	E	K	L	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T