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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5b43A_

Fold library idPDB HeaderMoleculeTitle
c5b43A_2.80PDB header: hydrolase/rna/dnaChain: A: PDB Molecule: crispr-associated endonuclease cpf1;


Added to library: Sat May 7 08:28:03 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MTQFEGFTNLYQVSKTLRFELIPQGKTLKHIQEQGFIEEDKARNDHYKELKPIIDRIYKTYADQCLQLVQ
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Known secondary structure (DSSP)


GGGSBSSS

TTTT

 .........80.........90.........100.........110.........120.........130.........140
Sequence LDWENLSAAIDSYRKEKTEETRNALIEEQATYRNAIHDYFIGRTDNLTDAINKRHAEIYKGLFKAELFNG
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Known secondary structure (DSSP)

TS

T

TTS
TTSSGGGTTS
 .........150.........160.........170.........180.........190.........200.........210
Sequence KVLKQLTTTEHENALLRSFDKFTTYFSGFYENRKNVFSAEDISTAIPHRIVQDNFPKFKENCHIFTRLIT
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Known secondary structure (DSSP)



GGGTT
GGGG

SS
TTST
 .........220.........230.........240.........250.........260.........270.........280
Sequence AVPSLREHFENVKKAIGIFVSTSIEEVFSFPFYNQLLTQTQIDLYNQLLGGISREAGTEKIKGLNEVLNL
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Known secondary structure (DSSP)
TTS
TTS
TTTTTSGGGGGG
SS
B

STTS

B

 .........290.........300.........310.........320.........330.........340.........350
Sequence AIQKNDETAHIIASLPHRFIPLFKQILSDRNTLSFILEEFKSDEEVIQSFCKYKTLLRNENVLETAEALF
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Known secondary structure (DSSP) T
SS









TT




SS






ST
 .........360.........370.........380.........390.........400.........410.........420
Sequence NELNSIDLTHIFISHKKLETISSALCDHWDTLRNALYERRISELTGKITKSAKEKVQRSLKHEDINLQEI
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Known secondary structure (DSSP) TTTS
GGG

SSSSTT

SS

SS
 .........430.........440.........450.........460.........470.........480.........490
Sequence ISAAGKELSEAFKQKTSEILSHAHAALDQPLPTTLKKQEEKEILKSQLDSLLGLYHLLDWFAVDESNEVD
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Known secondary structure (DSSP)
SS


S
S
STTB

STTS


 .........500.........510.........520.........530.........540.........550.........560
Sequence PEFSARLTGIKLEMEPSLSFYNKARNYATKKPYSVEKFKLNFQMPTLASGWDVNKEKNNGAILFVKNGLY
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Known secondary structure (DSSP) STTS








TT
TTTTS

BGGG
TT
 .........570.........580.........590.........600.........610.........620.........630
Sequence YLGIMPKQKGRYKALSFEPTEKTSEGFDKMYYDYFPDAAKMIPKCSTQLKAVTAHFQTHTTPILLSNNFI
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Known secondary structure (DSSP)


BTTB






B

TTSSS



TTT


S

TTBS
 .........640.........650.........660.........670.........680.........690.........700
Sequence EPLEITKEIYDLNNPEKEPKKFQTAYAKKTGDQKGYREALCKWIDFTRDFLSKYTKTTSIDLSSLRPSSQ
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Known secondary structure (DSSP) S



SSSS
TTST

BTTTTTS

TTS

GGG
 .........710.........720.........730.........740.........750.........760.........770
Sequence YKDLGEYYAELNPLLYHISFQRIAEKEIMDAVETGKLYLFQIYNKDFAKGHHGKPNLHTLYWTGLFSPEN
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Known secondary structure (DSSP)
SSGGGGB
SSS

GGGSTT

S


TS
 .........780.........790.........800.........810.........820.........830.........840
Sequence LAKTSIKLNGQAELFYRPKSRMEKMLNKKLKDQKTPIPDTLYQELYDYVNHRLSHDLSDEARALLPNVIT
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Known secondary structure (DSSP) S
SS
S








SB
SSSSSB

TT


S


TSTT

 .........850.........860.........870.........880.........890.........900.........910
Sequence KEVSHEIIKDRRFTSDKFFFHVPITLNYQAANSPSKFNQRVNAYLKEHPETPIIGIDRGERNLIYITVID
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Known secondary structure (DSSP)
SS


TT
GGGS
STTS
SS
SS
TT



SS
S

 .........920.........930.........940.........950.........960.........970.........980
Sequence STGKILEQRSLNTIQQFDYQKKLDNREKERVAARQAWSVVGTIKDLKQGYLSQVIHEIVDLMIHYQAVVV
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Known secondary structure (DSSP) TTS

STTTT




ST
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence LENLAVYQQFEKMLIDKLNCLVLKDYPAEKVGGVLNPYQLTDQFTSFAKMGTQSGFLFYVPAPYTSKIDP
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Known secondary structure (DSSP)


SB

TTS
TTSTTSTTS
B

S




STT

STT

TTSSSS
T
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LTGFVDPFVWKTIKNHESRKHFLEGFDFLHYDVKTGDFILHFKMNRNLSFQRGLPGFMPAWDIVFEKNET
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Known secondary structure (DSSP) TT




B
TTS

ST
TTT
STTS
GGGB
S


S
S



 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence QFDAKGTPFIAGKRIVPYRDLYPANELIALLEEKGIVFRDGSNILPKLLENDDSHAIDTMVALIRSVLQM
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Known secondary structure (DSSP)
TT

TT



T


TT



T
T

 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence RNSNAATGEDYINSPVRDLNGVCFDSRFQNPEWPMDADANGAYHIALKGQLLLNHLKESKDLKLQNGISN
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Known secondary structure (DSSP) TTTTB
SB

TTS


BGGG

TTS
SSSSSS


S


 .........1270..
Sequence QDWLAYIQELRN
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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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