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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5b1qA_

Fold library idPDB HeaderMoleculeTitle
c5b1qA_1.85PDB header: viral proteinChain: A: PDB Molecule: u14 protein;


Added to library: Sat Apr 23 08:16:46 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence NIPTFVLDENCNFIPDVLSRANAKFIKEVLIRDSYNAVCLANSFIPMATQTVEQILIIITKFKFSRSRDL
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Known secondary structure (DSSP)


GGG

TTTT

TTTS
B
TSSS






B
GGGGGG
 .........80.........90.........100.........110.........120.........130.........140
Sequence LMSVFRLGVHINRFYAGKNQVKHMITMMKSLFDTEEAMRQLDRALMGLFVDARDNSYMPLIALSLHENGL
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Known secondary structure (DSSP) GGG
STTT
SSSTTGGG
STTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence PDSKFIKAVRLIQTTVNSFHNRPDADIEQYAEKLRAYNYLYKIPKYTLKEAVDIYSDNLKDLTIGVNKKP
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Known secondary structure (DSSP)
GGGGSS




TTGGGGGSS
SS







T
S


 .........220.........230.........240.........250.........260.........270.........280
Sequence TLLFTSSDDAYLSHIYNDLLFLTSTWNMIYNCKKEIRRLNTWIKYEINSIMETAVLVGFQLPDLKETILD
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Known secondary structure (DSSP)

GGGT

SS
GGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LAALISNMNLVSPDKELFPHYKLILAKLFEICIFATKANICILPSFIKGHLIEFEDVLKRSNDDEDLNYL
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Known secondary structure (DSSP) S
TT


T





TT

 .........360.........370.........380.........390.........400.........410.........420
Sequence LLKSRDSDDEYDEDKPPIQVDPGRVDNVLTDSDFFNVTPENAFSSIAIMPISYDKTIDVEDNEIQVLEVE
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Known secondary structure (DSSP) S

TTGGG


TTS

GGG
TTS


GGGSTTT



GGGTTS






TT
 .........430.........440........
Sequence MQSLSAVVYGAVASKYGLSLEQVIRKLN
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Known secondary structure (DSSP)


TTT

TT


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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