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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5b0vA_

Fold library idPDB HeaderMoleculeTitle
c5b0vA_2.81PDB header: viral proteinChain: A: PDB Molecule: matrix protein vp40;


Added to library: Sat Jan 23 08:27:20 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence GITPNYVGDLNLDDQFKGNVCHAFTLEAIIDISNERTVKGVPAWLPLGIXSNFEYPLAHTVAALLTGSYT
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Known secondary structure (DSSP)
B




GGGTT
TT





GGGS


 .........80.........90.........100.........110.........120.........130.........140
Sequence ITQFTHNGQKFVRVNRLGTGIPAHPLRXLREGNQAFIQNXVIPRNFNQFTYNLTNLVLSVQKLPDDAWRP
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Known secondary structure (DSSP) SSS

S


TT
SSSGGGTS
TT






TT



 .........150.........160.........170.........180.........190.........200.........210
Sequence SKDKLIGNTXHPAVSIHPNLPPIVLPTVKKQAYRQHKNPNNGPLLAISGILHQLRVEKVPEKTSLFRISL
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Known secondary structure (DSSP)
S

SSTTS




B
GGGGSS
S
TTTTTGGG


TTSSS
 .........220.........230.........240.........250........
Sequence PADXFSVKEGXXENSPVVYFQAPENFPLNGFNNRQVVLAYANPTLSAV
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Known secondary structure (DSSP)
TTTB

SSS







TT

GGG



S
GGG



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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