PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5aymA_

Fold library id	PDB Header	Molecule	Title
c5aymA_	PDB header: transport protein	Chain: A: PDB Molecule: solute carrier family 39 (iron-regulated transporter);	PDBTitle: crystal structure of a bacterial homologue of iron transporter2 ferroportin in outward-facing state with soaked iron

Links to external resources
Added to library: Sat Nov 7 08:47:20 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L R I E T Q L L L G R L L T R S G D Q A W D F V V P F A L L V I F P G K L Q V A A F Y Y L I V K I G T F L L T P S S G K W I D T H P R I Q V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V K W G V W L Q F F A I L A G M V F F G M L D G L V R A G G R E S W L L S V L F I A L A L S G V M A S L G S Q I T D I S V G N D L A P S L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A P E K L T H F N S W L R R I D L A T E V G A P I L A G A L F P L A G L F L I G L W N L V S F V P E Y F L L R N V I Q R S G L K I K V L G S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
T S G G G

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence F S D P I F W L I L S Y A L L W L S V L S P H G V L L A A Y L K D E M R L P E T E I G L F R G L G A V F G L I S T V S F P Y L V R R L G L I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S T T G G G S
S T T
T S
T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence S S S R W H L G F Q G V T L G I A V T A F A M G S T A S V Y V F L G C I L L S R V G L Y G F S N G E F E L R Q R L I P E G R R G E L N S L S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S S
G G G

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . .

Sequence S L T T T S A T L I L F S A G S L L P Q T E D F K Y L V Y V S L A A V L L A N V V F I K W S S R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T S T

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	R	I	E	T	Q	L	L	L	G	R	L	L	T	R	S	G	D	Q	A	W	D	F	V	V	P	F	A	L	L	V	I	F	P	G	K	L	Q	V	A	A	F	Y	Y	L	I	V	K	I	G	T	F	L	L	T	P	S	S	G	K	W	I	D	T	H	P	R	I	Q	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																	S	T	T																												T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	K	W	G	V	W	L	Q	F	F	A	I	L	A	G	M	V	F	F	G	M	L	D	G	L	V	R	A	G	G	R	E	S	W	L	L	S	V	L	F	I	A	L	A	L	S	G	V	M	A	S	L	G	S	Q	I	T	D	I	S	V	G	N	D	L	A	P	S	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																												T	T		T	T	S																															T	T					S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	P	E	K	L	T	H	F	N	S	W	L	R	R	I	D	L	A	T	E	V	G	A	P	I	L	A	G	A	L	F	P	L	A	G	L	F	L	I	G	L	W	N	L	V	S	F	V	P	E	Y	F	L	L	R	N	V	I	Q	R	S	G	L	K	I	K	V	L	G	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		G	G	G																																																								T	S	G	G	G
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	F	S	D	P	I	F	W	L	I	L	S	Y	A	L	L	W	L	S	V	L	S	P	H	G	V	L	L	A	A	Y	L	K	D	E	M	R	L	P	E	T	E	I	G	L	F	R	G	L	G	A	V	F	G	L	I	S	T	V	S	F	P	Y	L	V	R	R	L	G	L	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T	S	T	T									G	G	G	S				S	T	T											T	S													T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	S	S	S	R	W	H	L	G	F	Q	G	V	T	L	G	I	A	V	T	A	F	A	M	G	S	T	A	S	V	Y	V	F	L	G	C	I	L	L	S	R	V	G	L	Y	G	F	S	N	G	E	F	E	L	R	Q	R	L	I	P	E	G	R	R	G	E	L	N	S	L	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T	T			T	T	S																														S		G	G	G
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Sequence	S	L	T	T	T	S	A	T	L	I	L	F	S	A	G	S	L	L	P	Q	T	E	D	F	K	Y	L	V	Y	V	S	L	A	A	V	L	L	A	N	V	V	F	I	K	W	S	S	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																				S	T	T	S																							T