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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5axwA_

Fold library idPDB HeaderMoleculeTitle
c5axwA_PDB header: hydrolase/rna/dnaChain: A: PDB Molecule: crispr-associated endonuclease cas9;PDBTitle: crystal structure of staphylococcus aureus cas9 in complex with sgrna2 and target dna (ttgggt pam)


Added to library: Sat Sep 5 08:28:47 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence RNYILGLDIGITSVGYGIIDYETRDVIDAGVRLFKEANVENNEGRRSKRGARRLKRRRRHRIQRVKKLLF
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Known secondary structure (DSSP)


SSTTT






 .........80.........90.........100.........110.........120.........130.........140
Sequence DYNLLTDHSELSGINPYEARVKGLSQKLSEEEFSAALLHLAKRRGVHNVNEVEEDTGNELSTKEQISRNS
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Known secondary structure (DSSP) TTS

SS


SS

TTTS





BSSGGG





S


 .........150.........160.........170.........180.........190.........200.........210
Sequence KALEEKYVAELQLERLKKDGEVRGSINRFKTSDYVKEAKQLLKVQKAYHQLDQSFIDTYIDLLETRRTYY
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Known secondary structure (DSSP) TTSSS
S


SSS


BTTTS






TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence EGPGEGSPFGWKDIKEWYEMLMGHCTYFPEELRSVKYAYNADLYNALNDLNNLVITRDENEKLEYYEKFQ
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Known secondary structure (DSSP) T
S
SS
TT

SSS
B
SS
TTSB

BTT
T

SSS
SS

 .........290.........300.........310.........320.........330.........340.........350
Sequence IIENVFKQKKKPTLKQIAKEILVNEEDIKGYRVTSTGKPEFTNLKVYHDIKDITARKEIIENAELLDQIA
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Known secondary structure (DSSP) TTTT
SS

TS
GGG


B
TTS
B







T
 .........360.........370.........380.........390.........400.........410.........420
Sequence KILTIYQSSEDIQEELTNLNSELTQEEIEQISNLKGYTGTHNLSLKAINLILDELWHTNDNQIAIFNRLK
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Known secondary structure (DSSP)

STT

S

TT




SB
SS
TS


TT
 .........430.........440.........450.........460.........470.........480.........490
Sequence LVPKKVDLSQQKEIPTTLVDDFILSPVVKRSFIQSIKVINAIIKKYGLPNDIIIELAREKNSKDAQKMIN
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Known secondary structure (DSSP)







SS
SS

SGGGGGG





S
S
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence EMQKRNRQTNERIEEIIRTTGKENAKYLIEKIKLHDMQEGKCLYSLEAIPLEDLLNNPFNYEVDHIIPRS
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Known secondary structure (DSSP) T

GGGGG
TTTB
TTT

B


GGGSS
 .........570.........580.........590.........600.........610.........620.........630
Sequence VSFDNSFNNKVLVKQEEASKKGNRTPFQYLSSSDSKISYETFKKHILNLAKGKGRISKTKKEYLLEERDI
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Known secondary structure (DSSP)


SGGG
SS
STT
SS
TSSTT


T

S
T
 .........640.........650.........660.........670.........680.........690.........700
Sequence NRFSVQKDFINRNLVDTRYATRGLMNLLRSYFRVNNLDVKVKSINGGFTSFLRRKWKFKKERNKGYKHHA
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Known secondary structure (DSSP) T
TS


TT




TT

SS

S
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence EDALIIANADFIFKEWKKLDKAKKVMENQMFMPEIETEQEYKEIFITPHQIKHIKDFKDYKYSHRVDKKP
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Known secondary structure (DSSP)
STTTT







S

GGG






B

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence NRELINDTLYSTRKDDKGNTLIVNNLNGLYDKDNDKLKKLINKSPEKLLMYHHDPQTYQKLKLIMEQYGD
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Known secondary structure (DSSP) SS

B



TTS

TT
TT


GGGBGGGTS
TTT
 .........850.........860.........870.........880.........890.........900.........910
Sequence EKNPLYKYYEETGNYLTKYSKKDNGPVIKKIKYYGNKLNAHLDITDDYPNSRNKVVKLSLKPYRFDVYLD
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Known secondary structure (DSSP) SS
S


B


TTS


B



S

GGGSTT
SS


B
 .........920.........930.........940.........950.........960.........970.........980
Sequence NGVYKFVTVKNLDVIKKENYYEVNSKAYEEAKKLKKISNQAEFIASFYNNDLIKINGELYRVIGVNNDLL
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Known secondary structure (DSSP) TTGGG
SS

TT

SS

BT
TTTTT
 .........990.........1000.........1010.........1020.........1030.........1040...
Sequence NRIEVNMIDITYREYLENMNDKRPPRIIKTIASKTQSIKKYSTDILGNLYEVKSKKHPQIIKK
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Known secondary structure (DSSP) T
SSS
TT

S
S

STT



TT




SS





Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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