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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5ancK_

Fold library idPDB HeaderMoleculeTitle
c5ancK_PDB header: translationChain: K: PDB Molecule: elongation factor tu gtp-binding domain-containingPDBTitle: mechanism of eif6 release from the nascent 60s ribosomal2 subunit


Added to library: Sat Oct 24 14:12:55 2015
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MVLNSLDKMIQLQKNTANIRNICVLAHVDHGKTTLADCLISSNGIISSRLAGKLRYMDSREDEQIRGITM
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Known secondary structure (DSSP)




TTS
SSS


SSSTT
TTTTTTTT
S
SS







 .........80.........90.........100.........110.........120.........130.........140
Sequence KSSAISLHYATGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVEGVCPQTQAVLRQAWLENIR
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Known secondary structure (DSSP)







TT









SSSS


SS

SS

SSTTTTTSTTS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence PVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAERETESQVNPNSEQGEQVYD
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Known secondary structure (DSSP)


ST




S


TTTSS

SSTTTSSS






STTTTTS
 .........220.........230.........240.........250.........260.........270.........280
Sequence WSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKEVLMKTLWGDYYINMKAKKI
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Known secondary structure (DSSP)







S
SSSSS

TTTT


TTTT


BS


S





SSS

 .........290.........300.........310.........320.........330.........340.........350
Sequence MKGDQAKGKKPLFVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGAREARHSDPKVQINAICSQWLP
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Known secondary structure (DSSP)
TTTTTS



SST
STTS


STTSSS

SS

 .........360.........370.........380.........390.........400.........410.........420
Sequence ISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMKCGSEDTAPVIIFVSKMFAV
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Known secondary structure (DSSP) T
S
TTSSTTS
SS
SS

SSSSSS
SSSTT
SS
TT






S



T
 .........430.........440.........450.........460.........470.........480.........490
Sequence DAKALPQNKPRPLTQEEIAQRRERARQRHAEKLAAAQGQAPLEPTQDGSAIETCPKGEEPRGDEQQVESM
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Known secondary structure (DSSP) TT




SSSTTTTTSSS
SSSSSSSTTT

SSSSSSSSS
S
 .........500.........510.........520.........530.........540.........550.........560
Sequence TPKPVLQEENNQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLRRVPLGFSAPPDGLPQVPHMAYCAL
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Known secondary structure (DSSP) S

SS


SS












SS

SSB


SS
TTSS






SSSSSS




 .........570.........580.........590.........600.........610.........620.........630
Sequence ENLYLLMGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLNFEATPIVRVAVEPKHPSEM
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Known secondary structure (DSSP)




SSS
SS
S




SS
S



TT



BTTB

BSSSS


SS




SSS


SSGGG
 .........640.........650.........660.........670.........680.........690.........700
Sequence PQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKIHISVSEPIIPFRETITKPP
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Known secondary structure (DSSP) SS

TTSS
SS
SS

SSSTTTTSS











S

 .........710.........720.........730.........740.........750.........760.........770
Sequence KVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATLSVRAMPLPEEVTQILEENS
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Known secondary structure (DSSP)
SSS

SS
S



S
SSS
SSTTS
SSSSTTTS
SS


S

SSSSSS

T
 .........780.........790.........800.........810.........820.........830.........840
Sequence DLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVDQIWSFGPRKCGPNILVNKS
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Known secondary structure (DSSP) S
STTTS
TTTS


SS


TT
SSTTS








S
S

SSSSSSS






 .........850.........860.........870.........880.........890.........900.........910
Sequence EDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVCFVLEKWDLSKFEEQGASDL
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Known secondary structure (DSSP) S
SSS
SSS
SS


S

SS
S
S
SSS
TTSSS
B
S
S





S
 .........920.........930.........940.........950.........960.........970.........980
Sequence AKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRL
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Known secondary structure (DSSP)

SS

SS

SS





S


SS
SS



SS
S
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence MAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASP
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Known secondary structure (DSSP)
GGGTS

TTSS
TTTTTTSSS
SB
 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence QLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLYVEEKIVEHAEKQRTLSKNK
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Known secondary structure (DSSP)






B

SSTTTTTS


TTTTB
STT
TTTSS



SS









SSTTTSSS


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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