PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5amqA_

Fold library id	PDB Header	Molecule	Title
c5amqA_	PDB header: hydrolase	Chain: A: PDB Molecule: rna polymerase l;	PDBTitle: structure of the la crosse bunyavirus polymerase in complex2 with the 3' and 5' viral rna

Links to external resources
Added to library: Sat Jun 6 08:21:58 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M D Y Q E Y Q Q F L A R I N T A R D A C V A K D I D V D L L M A R H D Y F G R E L C K S L N I E Y R N D V P F I D I I L D I R P E V D P L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S
S S S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I D A P H I T P D N Y L Y I N N V L Y I I D Y K V S V S N E S S V I T Y D K Y Y E L T R D I S D R L S I P I E I V I I R I D P V S R D L H I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S
S S S T T T
T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N S D R F K E L Y P T I V V D I N F N Q F F D L K Q L L Y E K F G D D E E F L L K V A H G D F T L T A P W C K T G C P E F W K H P I Y K E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S S
S S
S
S
G G G T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence K M S M P V P E R R L F E E S V K F N A Y E S E R W N T N L V K I R E Y T K K D Y S E H I S K S A K N I F L A S G F Y K Q P N K N E I S E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T S S S T T G G G T T
S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence W T L M V E R V Q D Q R E I S K S L H D Q K P S I H F I W G A H N P G N S N N A T F K L I L L S K S L Q S I K G I S T Y T E A F K S L G K M

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G
B
S S S
B
T T S
T
B S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence M D I G D K A I E Y E E F C M S L K S K A R S S W K Q I M N K K L E P K Q I N N A L V L W E Q Q F M I N N D L I D K S E K L K L F K N F C G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T T
S S
S
T T T T
S T T S
T T S

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I G K H D L E V S K P K I L D F D D A N M Y L A S L T M M E Q S K K I L S K S N G L K P D N F I L N E F G S R I K D A N K E T Y D N M H K I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T S S S B
S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence F E T G Y W Q C I S D F S T L M K N I L S V S Q Y N R H N T F R I A M C A N N N V F A I V F P S A D T V V Y S I I V L H K E E E N I F N P G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B T T
T T
S S T T
S S T T
S B
S S

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence C L H G T F K C M N G Y I S I S R A I R L D K E R C Q R I V S S P G L F L T T C L L F K H D N P T L V M S D I M N F S I Y T S L S I T K S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T
S S S
T
S

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence L S L T E P A R Y M I M N S L A I S S N V K D Y I A E K F S P Y T K T L F S V Y M T R L I K N A C F D A Y D Q R Q R V Q L R Q K G I K D N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S B
T
B T S
T T T S

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence E L T S I W F P G S V T L K E Y L T Q I Y L P F Y F N A K G L H E K H H V M V D L A K T I L E I E C E Q R E N I K E I W S T N C T K Q T V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S S
S G G G G
T T
S
S B
S S
T T
B

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence L K I L I H S L C K N L L A D T S R H N H L R N R I E N R N N F R R S I T T I S T F T S S K S C L K I G D F R K E K E L Q S V K Q K K I L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T T S S S B G G G
S G G G S S
S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence V Q S R K M R L A N N Y E M L R N A M P N Y T D Y I S T K V F D R L Y E L L D K K V L T D K P V I E Q I M D M M I D H K K F Y F T F F N K G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T B
T T S S
S S B

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence Q K T S K D R E I F V G E Y E A K M C M Y A V E R I A K E R C K L N P D E M I S E P G D G K L K V L E Q K S E Q E I R F L V E T T R Q K N R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S
B S S S B
T T
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . . . . . . 1040 . . . . . . . . . 1050

Sequence E I D E A I E A L A T E G Y E S N L G K I E K L S L G K A K G L K M E I N A D M S K W S A Q D V F Y K Y F W L I A L D P I L Y P Q E K E R I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
S S S
S S S S
B S S T T T T
T T
T T S

. . . . . . . . . 1060 . . . . . . . . . 1070 . . . . . . . . . 1080 . . . . . . . . . 1090 . . . . . . . . . 1100 . . . . . . . . . 1110 . . . . . . . . . 1120

Sequence L Y F M C N Y M D K E L I L P D E L L F N L L D Q K V A Y Q N D I I A T M T N Q L N S N T V L I K R N W L Q G N F N Y T S S Y V H S C A M S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T
S S
T T
T T T T T T B S
S
T T T T

. . . . . . . . . 1130 . . . . . . . . . 1140 . . . . . . . . . 1150 . . . . . . . . . 1160 . . . . . . . . . 1170 . . . . . . . . . 1180 . . . . . . . . . 1190

Sequence V Y K E I L K E A I T L L D G S I L V N S L V H S D D N Q T S I T I V Q D K M E N D K I I D F A M K E F E R A C L T F G C Q A N M K K T Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
T T S S S
T T
B
T T T

. . . . . . . . . 1200 . . . . . . . . . 1210 . . . . . . . . . 1220 . . . . . . . . . 1230 . . . . . . . . . 1240 . . . . . . . . . 1250 . . . . . . . . . 1260

Sequence T N C I K E F V S L F N L Y G E P F S I Y G R F L L T S V G D C A Y I G P Y E D L A S R I S S A Q T A I K H G C P P S L A W V S I A I S H W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S S
T T
T T T S
S
T T

. . . . . . . . . 1270 . . . . . . . . . 1280 . . . . . . . . . 1290 . . . . . . . . . 1300 . . . . . . . . . 1310 . . . . . . . . . 1320 . . . . . . . . . 1330

Sequence M T S L T Y N M L P G Q S N D P I D Y F P A E N R K D I P I E L N G V L D A P L S M I S T V G L E S G N L Y F L I K L L S K Y T P V M Q K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T S T T
G G G S S
S S S S S S
G G G T
S
G G G T T S S
T

. . . . . . . . . 1340 . . . . . . . . . 1350 . . . . . . . . . 1360 . . . . . . . . . 1370 . . . . . . . . . 1380 . . . . . . . . . 1390 . . . . . . . . . 1400

Sequence E S V V N Q I A E V K N W K V E D L T D N E I F R L K I L R Y L V L D A S I L T P R K F T T A G S L R K L Y S F S K Y Q D R L S S P G G M V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G G
T T T S
T T T
T T
S T T

. . . . . . . . . 1410 . . . . . . . . . 1420 . . . . . . . . . 1430 . . . . . . . . . 1440 . . . . . . . . . 1450 . . . . . . . . . 1460 . . . . . . . . . 1470

Sequence E L F T Y L L E K P E L L V T K G E D M K D Y M E S V I F R Y N S K R F K E S L S I Q N P A Q L F I E Q I L F S H K P V I D F S G I R D K Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S G G G G T
S S T T
S
T S S S
B
G G G

. . . . . . . . . 1480 . . . . . . . . . 1490 . . . . . . . . . 1500 . . . . . . . . . 1510 . . . . . . . . . 1520 . . . . . . . . . 1530 . . . . . . . . . 1540

Sequence I N G K V T F T E A Y R L L M R D L S S L E L T N D D I Q V I Y S Y I I L N D P M M I T I A N T H I L S I Y G S P Q R R M G M S C S T M P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B
T
T T T
S

. . . . . . . . . 1550 . . . . . . . . . 1560 . . . . . . . . . 1570 . . . . . . . . . 1580 . . . . . . . . . 1590 . . . . . . . . . 1600 . . . . . . . . . 1610

Sequence F R N S P A L V L R A Y S K N N P D I Q G A P T E M A R D L V H L K E F V E N T N L E E K M K V R I A M N E A E K G Q R D I V F E L K E M T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S
T S S

. . . . . . . . . 1620 . . . . . . . . . 1630 . . . . . . . . . 1640 . . . . . . . . . 1650 . . . . . . . . . 1660 . . . . . .

Sequence R F Y Q V C Y E Y V K S T E H K I K V F I L P A K S Y T T T D F C S L M Q G N L I K D K E W Y T V H Y L K Q I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S
S S
S T T
S S
S S

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	D	Y	Q	E	Y	Q	Q	F	L	A	R	I	N	T	A	R	D	A	C	V	A	K	D	I	D	V	D	L	L	M	A	R	H	D	Y	F	G	R	E	L	C	K	S	L	N	I	E	Y	R	N	D	V	P	F	I	D	I	I	L	D	I	R	P	E	V	D	P	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S																												T					S													S	S	S		T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	D	A	P	H	I	T	P	D	N	Y	L	Y	I	N	N	V	L	Y	I	I	D	Y	K	V	S	V	S	N	E	S	S	V	I	T	Y	D	K	Y	Y	E	L	T	R	D	I	S	D	R	L	S	I	P	I	E	I	V	I	I	R	I	D	P	V	S	R	D	L	H	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								S						S	S											S	S	S																				T	T	T												T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	S	D	R	F	K	E	L	Y	P	T	I	V	V	D	I	N	F	N	Q	F	F	D	L	K	Q	L	L	Y	E	K	F	G	D	D	E	E	F	L	L	K	V	A	H	G	D	F	T	L	T	A	P	W	C	K	T	G	C	P	E	F	W	K	H	P	I	Y	K	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S																						T	S	S											S	S							S		S				G	G	G	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	K	M	S	M	P	V	P	E	R	R	L	F	E	E	S	V	K	F	N	A	Y	E	S	E	R	W	N	T	N	L	V	K	I	R	E	Y	T	K	K	D	Y	S	E	H	I	S	K	S	A	K	N	I	F	L	A	S	G	F	Y	K	Q	P	N	K	N	E	I	S	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S																T	T	T	S	S	S	T	T																							G	G	G	T	T			S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	W	T	L	M	V	E	R	V	Q	D	Q	R	E	I	S	K	S	L	H	D	Q	K	P	S	I	H	F	I	W	G	A	H	N	P	G	N	S	N	N	A	T	F	K	L	I	L	L	S	K	S	L	Q	S	I	K	G	I	S	T	Y	T	E	A	F	K	S	L	G	K	M
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S						G	G	G		B		S	S	S			B					T	T	S																	T		B	S			S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	M	D	I	G	D	K	A	I	E	Y	E	E	F	C	M	S	L	K	S	K	A	R	S	S	W	K	Q	I	M	N	K	K	L	E	P	K	Q	I	N	N	A	L	V	L	W	E	Q	Q	F	M	I	N	N	D	L	I	D	K	S	E	K	L	K	L	F	K	N	F	C	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T			T	T																	T	T		S	S				S									T	T						T	T						S	T	T	S											T	T	S
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	G	K	H	D	L	E	V	S	K	P	K	I	L	D	F	D	D	A	N	M	Y	L	A	S	L	T	M	M	E	Q	S	K	K	I	L	S	K	S	N	G	L	K	P	D	N	F	I	L	N	E	F	G	S	R	I	K	D	A	N	K	E	T	Y	D	N	M	H	K	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T					S									T	T	S																			S	S	B		S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	F	E	T	G	Y	W	Q	C	I	S	D	F	S	T	L	M	K	N	I	L	S	V	S	Q	Y	N	R	H	N	T	F	R	I	A	M	C	A	N	N	N	V	F	A	I	V	F	P	S	A	D	T	V	V	Y	S	I	I	V	L	H	K	E	E	E	N	I	F	N	P	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B																					T	T			T	T								S	S	T	T																					S	S	T	T		S	B		S	S
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	C	L	H	G	T	F	K	C	M	N	G	Y	I	S	I	S	R	A	I	R	L	D	K	E	R	C	Q	R	I	V	S	S	P	G	L	F	L	T	T	C	L	L	F	K	H	D	N	P	T	L	V	M	S	D	I	M	N	F	S	I	Y	T	S	L	S	I	T	K	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S	S																				T														T	T		S	S	S														T			S
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	L	S	L	T	E	P	A	R	Y	M	I	M	N	S	L	A	I	S	S	N	V	K	D	Y	I	A	E	K	F	S	P	Y	T	K	T	L	F	S	V	Y	M	T	R	L	I	K	N	A	C	F	D	A	Y	D	Q	R	Q	R	V	Q	L	R	Q	K	G	I	K	D	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T											S	S	B										T							B																				T					S				T	T	T	S
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	E	L	T	S	I	W	F	P	G	S	V	T	L	K	E	Y	L	T	Q	I	Y	L	P	F	Y	F	N	A	K	G	L	H	E	K	H	H	V	M	V	D	L	A	K	T	I	L	E	I	E	C	E	Q	R	E	N	I	K	E	I	W	S	T	N	C	T	K	Q	T	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S	S	S													S	G	G	G	G			T	T		S																											S	B		S	S			T	T		B
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	L	K	I	L	I	H	S	L	C	K	N	L	L	A	D	T	S	R	H	N	H	L	R	N	R	I	E	N	R	N	N	F	R	R	S	I	T	T	I	S	T	F	T	S	S	K	S	C	L	K	I	G	D	F	R	K	E	K	E	L	Q	S	V	K	Q	K	K	I	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T		T	T									T	T	S	S	S	B	G	G	G		S	G	G	G	S	S							S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	V	Q	S	R	K	M	R	L	A	N	N	Y	E	M	L	R	N	A	M	P	N	Y	T	D	Y	I	S	T	K	V	F	D	R	L	Y	E	L	L	D	K	K	V	L	T	D	K	P	V	I	E	Q	I	M	D	M	M	I	D	H	K	K	F	Y	F	T	F	F	N	K	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	T												T	B																			T	T	S	S		S	S	B
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	Q	K	T	S	K	D	R	E	I	F	V	G	E	Y	E	A	K	M	C	M	Y	A	V	E	R	I	A	K	E	R	C	K	L	N	P	D	E	M	I	S	E	P	G	D	G	K	L	K	V	L	E	Q	K	S	E	Q	E	I	R	F	L	V	E	T	T	R	Q	K	N	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S	S	S								B																					S	S	S	B		T	T			T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050
Sequence	E	I	D	E	A	I	E	A	L	A	T	E	G	Y	E	S	N	L	G	K	I	E	K	L	S	L	G	K	A	K	G	L	K	M	E	I	N	A	D	M	S	K	W	S	A	Q	D	V	F	Y	K	Y	F	W	L	I	A	L	D	P	I	L	Y	P	Q	E	K	E	R	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T	S		S	S	S									S	S	S	S												B	S	S	T	T	T	T			T	T										T	T	S
	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120
Sequence	L	Y	F	M	C	N	Y	M	D	K	E	L	I	L	P	D	E	L	L	F	N	L	L	D	Q	K	V	A	Y	Q	N	D	I	I	A	T	M	T	N	Q	L	N	S	N	T	V	L	I	K	R	N	W	L	Q	G	N	F	N	Y	T	S	S	Y	V	H	S	C	A	M	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T															T		S	S			T	T						T	T	T	T	T	T	B	S						S				T	T	T	T
	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190
Sequence	V	Y	K	E	I	L	K	E	A	I	T	L	L	D	G	S	I	L	V	N	S	L	V	H	S	D	D	N	Q	T	S	I	T	I	V	Q	D	K	M	E	N	D	K	I	I	D	F	A	M	K	E	F	E	R	A	C	L	T	F	G	C	Q	A	N	M	K	K	T	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T											T	T											S	S	S																				T	T			B		T	T	T
	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260
Sequence	T	N	C	I	K	E	F	V	S	L	F	N	L	Y	G	E	P	F	S	I	Y	G	R	F	L	L	T	S	V	G	D	C	A	Y	I	G	P	Y	E	D	L	A	S	R	I	S	S	A	Q	T	A	I	K	H	G	C	P	P	S	L	A	W	V	S	I	A	I	S	H	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S					S	S					T	T						T							T	T	S					S																			T	T
	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330
Sequence	M	T	S	L	T	Y	N	M	L	P	G	Q	S	N	D	P	I	D	Y	F	P	A	E	N	R	K	D	I	P	I	E	L	N	G	V	L	D	A	P	L	S	M	I	S	T	V	G	L	E	S	G	N	L	Y	F	L	I	K	L	L	S	K	Y	T	P	V	M	Q	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T		S	T	T	S	T	T			G	G	G	S	S		S	S	S	S	S	S		G	G	G	T					S									G	G	G												T	T	S	S						T
	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.	.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
Sequence	E	S	V	V	N	Q	I	A	E	V	K	N	W	K	V	E	D	L	T	D	N	E	I	F	R	L	K	I	L	R	Y	L	V	L	D	A	S	I	L	T	P	R	K	F	T	T	A	G	S	L	R	K	L	Y	S	F	S	K	Y	Q	D	R	L	S	S	P	G	G	M	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S								G	G	G	G			T	T	T	S														T	T	T																	T	T													S	T	T
	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470
Sequence	E	L	F	T	Y	L	L	E	K	P	E	L	L	V	T	K	G	E	D	M	K	D	Y	M	E	S	V	I	F	R	Y	N	S	K	R	F	K	E	S	L	S	I	Q	N	P	A	Q	L	F	I	E	Q	I	L	F	S	H	K	P	V	I	D	F	S	G	I	R	D	K	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	G	G	G	G	T				S	S												T	T									S														T	S	S	S			B							G	G	G
	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.	.	1530	.	.	.	.	.	.	.	.	.	1540
Sequence	I	N	G	K	V	T	F	T	E	A	Y	R	L	L	M	R	D	L	S	S	L	E	L	T	N	D	D	I	Q	V	I	Y	S	Y	I	I	L	N	D	P	M	M	I	T	I	A	N	T	H	I	L	S	I	Y	G	S	P	Q	R	R	M	G	M	S	C	S	T	M	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					B															T																T	T	T																								S
	.	.	.	.	.	.	.	.	.	1550	.	.	.	.	.	.	.	.	.	1560	.	.	.	.	.	.	.	.	.	1570	.	.	.	.	.	.	.	.	.	1580	.	.	.	.	.	.	.	.	.	1590	.	.	.	.	.	.	.	.	.	1600	.	.	.	.	.	.	.	.	.	1610
Sequence	F	R	N	S	P	A	L	V	L	R	A	Y	S	K	N	N	P	D	I	Q	G	A	P	T	E	M	A	R	D	L	V	H	L	K	E	F	V	E	N	T	N	L	E	E	K	M	K	V	R	I	A	M	N	E	A	E	K	G	Q	R	D	I	V	F	E	L	K	E	M	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S	S					S																					T																	S	S
	.	.	.	.	.	.	.	.	.	1620	.	.	.	.	.	.	.	.	.	1630	.	.	.	.	.	.	.	.	.	1640	.	.	.	.	.	.	.	.	.	1650	.	.	.	.	.	.	.	.	.	1660	.	.	.	.	.	.
Sequence	R	F	Y	Q	V	C	Y	E	Y	V	K	S	T	E	H	K	I	K	V	F	I	L	P	A	K	S	Y	T	T	T	D	F	C	S	L	M	Q	G	N	L	I	K	D	K	E	W	Y	T	V	H	Y	L	K	Q	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S	S												S	S				S												T	T		S	S								S	S