PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ajaC_

Fold library id	PDB Header	Molecule	Title
c5ajaC_	PDB header: viral protein	Chain: C: PDB Molecule: sam domain and hd domain-containing protein;	PDBTitle: crystal structure of mandrill samhd1 (amino acid residues 1-114)2 bound to vpx isolated from mandrill and human dcaf1 (amino3 acid residues 1058-1396)

Links to external resources
Added to library: Sat Apr 25 08:18:03 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M Q Q A D S D Q P S K R P R F D D S P R T P P G V E L H P D Y K T W G P E Q V C F F L R R G G F G E P A L L K N I R E N K I T G A L L P C L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
S S
G G G
S
S S G G G
T T
T T
T T T G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . .

Sequence D E S H F E N S L G E R K K L L S Y I Q R S G Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	Q	Q	A	D	S	D	Q	P	S	K	R	P	R	F	D	D	S	P	R	T	P	P	G	V	E	L	H	P	D	Y	K	T	W	G	P	E	Q	V	C	F	F	L	R	R	G	G	F	G	E	P	A	L	L	K	N	I	R	E	N	K	I	T	G	A	L	L	P	C	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S				S	S				G	G	G								S				S	S	G	G	G													T	T													T	T			T	T	T	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Sequence	D	E	S	H	F	E	N	S	L	G	E	R	K	K	L	L	S	Y	I	Q	R	S	G	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						S