PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.0

Fold library entry viewer: c5aj3j_

Fold library id	PDB Header	Molecule	Title
c5aj3j_	PDB header: ribosome	Chain: J: PDB Molecule: mitoribosomal protein us10m, mrps10;	PDBTitle: structure of the small subunit of the mammalian mitoribosome

Links to external resources
Added to library: Sat Apr 25 08:17:05 2015

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A R K K V R P R L I A E L A R R V R A L R E Q R E R P R D S Q R Y A L D Y E T M M R P H S G N R L P M R A W A D V R H E S R L L Q L L N R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
B T T T T B
T T T
B
T T S
T T T S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence P L F G L G R L V T R K S W L W Q H D E P C Y W R L T R V R P D Y A A E N L D H G K A W G I L T F K G K T E S E A R E I E Q V M Y H D W R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S T T
S S
T T T
T T
S
S
T T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V P K H E E E A F T X X X X X X X D T P L S V P Y P P L L R A M I L A Q R Q K Y G D T S T E E P M L N L E R A R I D P W D Y P A K L E A K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S T T
S
S
T
T T
T T S
S

. . .

Sequence K T K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	R	K	K	V	R	P	R	L	I	A	E	L	A	R	R	V	R	A	L	R	E	Q	R	E	R	P	R	D	S	Q	R	Y	A	L	D	Y	E	T	M	M	R	P	H	S	G	N	R	L	P	M	R	A	W	A	D	V	R	H	E	S	R	L	L	Q	L	L	N	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S																											B	T	T	T	T	B		T	T	T			B			T	T	S										T	T	T	S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	P	L	F	G	L	G	R	L	V	T	R	K	S	W	L	W	Q	H	D	E	P	C	Y	W	R	L	T	R	V	R	P	D	Y	A	A	E	N	L	D	H	G	K	A	W	G	I	L	T	F	K	G	K	T	E	S	E	A	R	E	I	E	Q	V	M	Y	H	D	W	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S	T	T															S	S															T	T	T													T	T					S					S		T	T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	P	K	H	E	E	E	A	F	T	X	X	X	X	X	X	X	D	T	P	L	S	V	P	Y	P	P	L	L	R	A	M	I	L	A	Q	R	Q	K	Y	G	D	T	S	T	E	E	P	M	L	N	L	E	R	A	R	I	D	P	W	D	Y	P	A	K	L	E	A	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T					S	T	T							S		S																				T												T	T						T	T	S					S
	.	.	.
Sequence	K	T	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)