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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5af3A_

Fold library idPDB HeaderMoleculeTitle
c5af3A_1.78PDB header: dna bindingChain: A: PDB Molecule: vapbc49;


Added to library: Sat Jan 30 08:33:50 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LRFDVPLYTLAEASRYLVVPRATLATWADQPIITALPHPTGSHARLPFVGIAEAYVLNAFRRAGVPMQRI
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Known secondary structure (DSSP)

SSS

T




SS





TT


TT


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence RPSLDWLIKNVGPHALASQDLCTDGAEVLWRFAERSGEGSPDDLVVRGLIVPRSGQYVFKEIVEHYLQQI
Predicted secondary structure




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Known secondary structure (DSSP)
TTGGGBTT
TTSTT
TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence SFADDNLASMIRLPQYGDANVVLDPRRGYGQPVFDGSGVRVADVLGPLRAGATFQAVADDYGVTPDQLRD
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Known secondary structure (DSSP)
TTSB
GGGGGG

TTSGGGS
TTT

BTTT

TS
 ....
Sequence ALDA
Predicted secondary structure

SS confidence



Known secondary structure (DSSP) T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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