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 Protein Homology/analogY Recognition Engine V 2.0


 

Fold library entry viewer: c5aexJ_

Fold library idPDB HeaderMoleculeTitle
c5aexJ_3.20PDB header: membrane proteinChain: J: PDB Molecule: ammonium transporter mep2;


Added to library: Sat Jan 23 08:35:17 2016
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence SYNFTGTPTGEGTGGNSLTTDLNTQFDLANMGWIGVASAGVWIMVPGIGLLYSGLSRKKHALSLLWASMM
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Known secondary structure (DSSP)








SSTT
S
TTT

TTTTS
T
SS

SS
 .........80.........90.........100.........110.........120.........130.........140
Sequence ASAVCIFQWFFWGYSLAFSHNTRGNGFIGTLEFFGFRNVLGAPSSVSSLPDILFAVYQGMFAAVTGALML
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Known secondary structure (DSSP) T
S
TTTT
STTGGGTT
SSSB
SSTTSB
 .........150.........160.........170.........180.........190.........200.........210
Sequence GGACERARLFPMMVFLFLWMTIVYCPIACWVWNAEGWLVKLGSLDYAGGLCVHLTSGHGGLVYALILKYK
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Known secondary structure (DSSP) S
TTB
TTSTT
T


SS
TTTT



 .........220.........230.........240.........250.........260.........270.........280
Sequence PHSVTSVVLGTVFLWFGWMFFNGGSAGNATIRAWYSIMSTNLAAACGGLTWMVIDYFRCGRKWTTVGLCS
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Known secondary structure (DSSP)
S
GGGSSSSTTTS


TT
 .........290.........300.........310.........320.........330.........340.........350
Sequence GIIAGLVGITPAAGFVPIWSAVVIGVVTGAGCNLAVDLKSLLRIDDGLDCYSIHGVGGCIGSVLTGIFAA
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Known secondary structure (DSSP) TTTTTTS
GGGTTT


TTTS

 .........360.........370.........380.........390.........400.........410.........420
Sequence DYVNATAGSYISPIDGGWINHHYKQVGYQLAGICAALAWTVTVTSILLLTMNAIPFLKLRLIGEFTYEES
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Known secondary structure (DSSP) TTTTTTTTTS






GGGT
TTSTTS
SB


SSS

TT
 .......
Sequence TAYIPEP
Predicted secondary structure






SS confidence






Known secondary structure (DSSP)

S




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol


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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg 
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